Package: ldsep
Title: Linkage Disequilibrium Shrinkage Estimation for Polyploids
Version: 1.0.0
Authors@R: 
    person(given = "David",
           family = "Gerard",
           role = c("aut", "cre"),
           email = "gerard.1787@gmail.com",
           comment = c(ORCID = "0000-0001-9450-5023"))
Description: Estimate gametic or composite pairwise linkage disequilibrium
    (LD) in polyploids, using either genotypes or genotype likelihoods. 
    Support is provided to estimate the popular measures of LD: the LD 
    coefficient D, the standardized LD coefficient D', and the Pearson 
    correlation coefficient r. All estimates are returned with corresponding 
    standard errors. These estimates and standard errors can then be used
    for shrinkage estimation. The main functions are ldest(), mldest(),
    sldest(), plot.lddf(), format_lddf(), and ldshrink().
License: GPL-3
BugReports: https://github.com/dcgerard/ldsep/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
LinkingTo: Rcpp, RcppArmadillo
Imports: Rcpp, foreach, doParallel, ashr, corrplot, lpSolve
Suggests: testthat, covr, knitr, rmarkdown, updog (>= 2.0.2)
Depends: R (>= 2.10)
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2020-07-26 15:44:25 UTC; dgerard
Author: David Gerard [aut, cre] (<https://orcid.org/0000-0001-9450-5023>)
Maintainer: David Gerard <gerard.1787@gmail.com>
Repository: CRAN
Date/Publication: 2020-08-02 01:20:03 UTC
Built: R 4.1.0; x86_64-w64-mingw32; 2020-08-02 23:42:31 UTC; windows
Archs: i386, x64
