# k-Top Scoring Pairs for Microarray Classification

## Documentation for package ‘ktspair’ version 1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.

## Help Pages

ktspair-package | Computation of the k-TSP
AUC.calc | Compute the AUC
bootstrap.graphic.ktsp | Graphical display of the bootstrap procedure
bootstrap.ktsp | Bootstrap procedure for the k-TSP
cv | Crossvalidation for the parameter k
cv2 | Crossvalidation with chosen pairs of genes
dat | Simulated gene expressions of individuals.
eSet | Simulated gene expressions of individuals.
grp | Group of the individuals.
kts.pair | Calculation of the k top scoring pairs.
ktspair | Computation of the k-TSP
ktspcalc | Compute the k top scoring pairs based on a gene expression matrix and a group indicator vector.
ktspcalc2 | The k-TSP with chosen pairs of genes
ktspdata | Simulated dataset of gene expressions in a matrix form.
ktspplot | Graphical representation of ktsp objects
make.consecutive.int | Transform the group vector into a binary vector
ordertsp | Ordering of the pairs of genes
plot.ktsp | Graphical representation of ktsp objects
predict.ktsp | Prediction using a ktsp object
print.ktsp | Print the results of the k-TSP
rank_na | Rank the gene expression and Replace NA
ROC.graphic.ktsp | Graphical display of the ROC curve
ROC.offset | ROC curve based on the offset method for k-TSP method
ROC.voting | ROC curve based on the voting system for k-TSP method
summary.ktsp | Summary of ktsp object