Package: intePareto
Type: Package
Title: Integrative Analysis of RNA-Seq and ChIP-Seq Data
Version: 0.0.1
Date: 2019-10-08
Authors@R: 
    person(given = "Yingying",
           family = "Cao",
           role = c("aut", "cre"),
           email = "yingying.cao@uni-due.de")
Description: Integrative analysis of gene expression (RNA-Seq data), and histone 
    modification data for user-defined sets of histone marks (ChIP-Seq data) to 
    discover consistent changes in genes between biological conditions. 
    Additionally, Pareto optimization is used to prioritize genes based on the 
    level of consistent changes in both RNA-Seq and ChIP-Seq data.
License: GPL (>= 2)
Depends: R (>= 3.6.0)
Imports: GenomicRanges, GenomeInfoDb, IRanges, GenomicAlignments,
        biomaRt, Rsamtools, rPref, DESeq2, apeglm
Suggests: knitr, rmarkdown
LazyLoad: yes
NeedsCompilation: no
ByteCompile: true
Encoding: UTF-8
Packaged: 2019-10-08 18:20:45 UTC; yingying
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Author: Yingying Cao [aut, cre]
Maintainer: Yingying Cao <yingying.cao@uni-due.de>
Repository: CRAN
Date/Publication: 2019-10-09 16:10:02 UTC
Built: R 4.1.0; ; 2020-08-03 08:44:29 UTC; windows
