# Integrative Analysis of RNA-Seq and ChIP-Seq Data

## Documentation for package ‘intePareto’ version 0.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

bam2counts | Compute the number of reads fall into specific genomic region
bam2rpm | Compute the normalized number of reads (rpm) fall into specific genomic region
counts2lFC | Calculate log2FoldChange
df_final | an example of the result of doIntegration
doIntegration | Do integrative analysis
doMatch | Match the RNA-Seq and ChIP-Seq data on the gene level
doPareto | Prioritization of genes based on Z scores
promoter | an example of promoter region
res | an example of the result of doMatch
test_chip_meta | meta data of preprocessed ChIP-Seq data
test_rna_meta | meta data of preprocessed RNA-Seq data