Package: idiogramFISH
Title: Idiograms with Marks and Karyotype Indices
Version: 1.16.1
Date: 2020-07-29
Authors@R: c(person("Fernando", "Roa", email = "froao@unal.edu.co", role = c("aut", "cre") ), 
             person(given="Mariana PC Telles", email = "", role = c("ctb")) 
             )
Description: Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames 
    for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with 
    visible chromatids (when not circular).
    Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded; 
    and six styles of marks: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow, downArrow; 
    its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in 
    concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) 
    <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) 
    <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes
    by morphology Guerra (1986) and Levan et al. (1964).
Depends: R (>= 3.0)
Imports: crayon, dplyr, tidyr
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Suggests: plyr, rmdformats, knitr, kableExtra, rvcheck, badger,
        rmarkdown, RCurl, ggpubr, ggtree, phytools, ggplot2, treeio,
        rentrez
VignetteBuilder: plyr, rmdformats, knitr, kableExtra, rmarkdown, RCurl,
        rvcheck, badger, rentrez
SystemRequirements: pandoc (>= 2.0)
URL: https://ferroao.gitlab.io/manualidiogramfish/,
        https://ferroao.gitlab.io/idiogramFISH
BugReports: https://gitlab.com/ferroao/idiogramFISH/issues
RoxygenNote: 7.1.0
NeedsCompilation: no
Packaged: 2020-07-30 03:23:22 UTC; fernando
Author: Fernando Roa [aut, cre],
  Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Repository: CRAN
Date/Publication: 2020-07-30 08:20:03 UTC
Built: R 4.1.0; ; 2020-08-02 23:49:46 UTC; windows
