# Generalized Linear Latent Variable Models

## Documentation for package ‘gllvm’ version 1.2.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

anova.gllvm | Analysis Of Deviance for gllvm
coefplot | Plot covariate coefficients and confidence intervals
coefplot.gllvm | Plot covariate coefficients and confidence intervals
confint.gllvm | Confidence intervals for model parameters
getLV | Extract latent variables
getLV.gllvm | Extract latent variables
getPredictErr | Extract prediction errors for latent variables from gllvm object
getPredictErr.gllvm | Extract prediction errors for latent variables from gllvm object
getResidualCor | Extract residual correlations from gllvm object
getResidualCor.gllvm | Extract residual correlations from gllvm object
getResidualCov | Extract residual covariance matrix from gllvm object
getResidualCov.gllvm | Extract residual covariance matrix from gllvm object
gllvm | Generalized Linear Latent Variable Models
logLik.gllvm | Log-likelihood of gllvm
microbialdata | Microbial community data
ordiplot | Plot latent variables from gllvm model
ordiplot.gllvm | Plot latent variables from gllvm model
plot.gllvm | Plot Diagnostics for an gllvm Object
predict | Predict Method for gllvm Fits
predict.gllvm | Predict Method for gllvm Fits
predictLVs | Predict latent variables for gllvm Fits
predictLVs.gllvm | Predict latent variables for gllvm Fits
randomCoefplot | Plot random slope coefficients
randomCoefplot.gllvm | Plot random slope coefficients
residuals.gllvm | Dunn-Smyth residuals for gllvm model
simulate | Simulate data from gllvm fit
simulate.gllvm | Simulate data from gllvm fit
sim_bacteria | Simulated bacteria data
summary.gllvm | Summarizing gllvm model fits