# Handling, Visualisation and Analysis of Epidemiological Contacts

## Documentation for package ‘epicontacts’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

as.igraph.epicontacts | Create igraph object from contact data
cases_pal | Color tools and palettes for epicontacts
codeawesome | Reference codes for fontawesome
edges_pal | Color tools and palettes for epicontacts
epicontacts | Read linelist and contact data
fac2col | Color tools and palettes for epicontacts
get_clusters | Assign cluster IDs to epicontacts data
get_degree | Find node degree for epicontacts objects
get_id | Access unique identifiers in epicontacts objects
get_pairwise | Characterise contacts by comparing case attributes
graph3D | Interactive 3D Force-directed graph from epicontacts object
make_epicontacts | Read linelist and contact data
plot.epicontacts | Plot epicontacts objects
print.epicontacts | Print method for epicontacts objects
print.summary_epicontacts | Print method for summary_epicontacts objects
spectral | Color tools and palettes for epicontacts
subset.epicontacts | Subset an epicontact object by factors
subset_clusters_by_id | Subset epicontacts by case-specified clusters
subset_clusters_by_size | Subset clusters from epicontacts object by cluster size
summary.epicontacts | Summary method for epicontacts objects
summary_epicontacts | Summary method for epicontacts objects
thin | Thin data to retain matching linelist / contacts
transp | Color tools and palettes for epicontacts
vis_epicontacts | Plot epicontacts objects using visNetwork
[.epicontacts | Subset epicontacts objects based on case identifiers