analyze_fragmentation	analyze_fragmentation
bin_fragment_size	bin_fragment_size
compare_simulated_observed	compare_simulated_observed
create_background_panel	create_background_panel
create_background_panel_instance	create_background_panel_instance
create_black_list	create_black_list
extract_trinucleotide_context	extract_trinucleotide_context
filter_mutations	filter_mutations
get_background_rate	get_background_rate
get_bam_chr	get_bam_chr
get_bam_SM	get_bam_SM
get_fragment_size	get_fragment_size
get_hist_bins	get_hist_bins
get_mutations_fragment_size	get_mutations_fragment_size
get_mutations_read_counts	get_mutations_read_counts
get_mutations_read_names	get_mutations_read_names
get_mutation_read_names	get_mutation_read_names
get_read_counts	get_read_counts
merge_mutations_in_phase	merge_mutations_in_phase
mutations	mutations
positivity_test	positivity_test
simulator	simulator
summarize_fragment_size	summarize_fragment_size
targets	targets
test_ctDNA	test_ctDNA
vcf_to_mutations_df	vcf_to_mutations_df
verify_tag	verify_tag
