# Compositional Analysis of Differentially Expressed Proteins in Cancer

## Documentation for package ‘canprot’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

canprot-package | Compositional Analysis of Differentially Expressed Proteins
.pdat_multi | Get Protein Expression Data
.pdat_osmotic | Get Protein Expression Data
check_IDs | Check UniProt IDs
cleanup | Clean Up Data
CLES | Common Language Effect Size
cplab | Plot Compositional Differences
diffplot | Plot Compositional Differences
Ehplot | Plot Eh
get_colors | Get Colors
get_comptab | Calculate Compositional Differences
GRAVY | Calculate Compositional Metrics for Proteins
groupplots | Plot Potential Diagrams for Groups of Datasets
H2OAA | Calculate Compositional Metrics for Proteins
human | Amino Acid Compositions of Human Proteins
human_aa | Amino Acid Compositions of Human Proteins
human_additional | Amino Acid Compositions of Human Proteins
human_base | Amino Acid Compositions of Human Proteins
human_extra | Amino Acid Compositions of Human Proteins
mergedplot | Plot Potential Diagrams for Groups of Datasets
metrics | Calculate Compositional Metrics for Proteins
mkvig | Compile and View Vignettes from the Command Line
MWAA | Calculate Compositional Metrics for Proteins
pdat_ | Get Protein Expression Data
pdat_3D | Get Protein Expression Data
pdat_breast | Get Protein Expression Data
pdat_colorectal | Get Protein Expression Data
pdat_glucose | Get Protein Expression Data
pdat_hypoxia | Get Protein Expression Data
pdat_liver | Get Protein Expression Data
pdat_lung | Get Protein Expression Data
pdat_osmotic_bact | Get Protein Expression Data
pdat_osmotic_euk | Get Protein Expression Data
pdat_osmotic_halo | Get Protein Expression Data
pdat_pancreatic | Get Protein Expression Data
pdat_prostate | Get Protein Expression Data
pdat_secreted | Get Protein Expression Data
pI | Calculate Compositional Metrics for Proteins
protcomp | Protein Compositions
PS | Retrieve Phylostrata for Given UniProt IDs
qdist | Quantile Distributions for One Dataset
rankdiff | Weighted Difference of Sums of Ranks
rankplot | Plot Ranking of Chemical Affinities
recomp | Recompute Protein Compositions
uniprot_updates | Amino Acid Compositions of Human Proteins
xsummary | Summarize Compositional Differences
xsummary2 | Summarize Compositional Differences
xsummary3 | Summarize Compositional Differences
ZCAA | Calculate Compositional Metrics for Proteins