Package: baytrends
Type: Package
Title: Long Term Water Quality Trend Analysis
Description: Enable users to evaluate long-term trends using a Generalized 
    Additive Modeling (GAM) approach. The model development includes selecting a 
    GAM structure to describe nonlinear seasonally-varying changes over time, 
    incorporation of hydrologic variability via either a river flow or salinity, 
    the use of an intervention to deal with method or laboratory changes 
    suspected to impact data values, and representation of left- and 
    interval-censored data. The approach has been applied to water quality data 
    in the Chesapeake Bay, a major estuary on the east coast of the United 
    States to provide insights to a range of management- and research-focused 
    questions.
Author: Rebecca Murphy, Elgin Perry, Jennifer Keisman, Jon Harcum, Erik W Leppo
Version: 1.2.1
Date: 2020-03-31
Maintainer: Erik Leppo <Erik.Leppo@tetratech.com>
Depends: R (>= 3.5.0), lubridate, mgcv
License: GPL-3
LazyData: TRUE
RoxygenNote: 7.1.0
Encoding: UTF-8
Suggests: devtools, fitdistrplus, grDevices, imputeTS, knitr, nlme,
        pander, readxl, rmarkdown, sessioninfo, testthat
Imports: XML, dataRetrieval, digest, gdata, memoise, methods, plyr,
        survival, zCompositions
URL: https://github.com/tetratech/baytrends
VignetteBuilder: knitr
Collate: 'a1_smwrQW_qw-class.R' 'a2_smwrQW_lcens-class.R'
        'a3_smwrQW_mcens-class.R' 'analysisOrganizeData.R'
        'appendDateFeatures.R' 'as.lcens.R' 'as.mcens.R' 'as.qw.R'
        'baytrends.R' 'checkRange.R' 'chkParameter.R' 'closeOut.R'
        'createResiduals.R' 'data.R' 'detrended.flow.R'
        'detrended.salinity.R' 'expectMaxFunctions.r' 'findFile.R'
        'flwAveragePred.R' 'fmtPval.R' 'gamDiff.R' 'gamPlotCalc.r'
        'gamPlotDisp.R' 'gamPlotDispSeason.R' 'gamTables.R' 'gamTest.r'
        'gamTestSeason.r' 'getUSGSflow.R' 'headers2.R'
        'imputeCensored.R' 'initializeResults.r' 'layerAggregation.R'
        'loadData.R' 'loadExcel.R' 'loadModels.R' 'loadModelsResid.R'
        'mergeFlow.R' 'mergeSalinity.R' 'qw.export.R' 'qw.import.R'
        'reAttDF.R' 'saveDF.R' 'seasAdjflow2.R' 'selectData.R'
        'smwrBase_baseDay.R' 'smwrBase_baseDay2decimal.R'
        'smwrBase_dectime.R' 'smwrBase_dectime2Date.R'
        'smwrBase_eventProcessing.R' 'smwrBase_fillMissing.R'
        'smwrBase_group2row.R' 'smwrBase_importRDB.R'
        'smwrBase_isLike.R' 'smwrBase_na2miss.R' 'smwrBase_z%cn%.R'
        'smwrGraphs_addCaption.R' 'smwrGraphs_colorPlot.R'
        'smwrGraphs_colors.R' 'smwrGraphs_datePretty.R'
        'smwrGraphs_lineWt.R' 'smwrGraphs_linearPretty.R'
        'smwrGraphs_logPretty.R' 'smwrGraphs_month.USGS.R'
        'smwrGraphs_namePretty.R' 'smwrGraphs_numericData.R'
        'smwrGraphs_refLine.R' 'smwrGraphs_renderPretty.R'
        'smwrGraphs_setAxis.R' 'smwrGraphs_setColor.R'
        'smwrGraphs_setExplan.R' 'smwrGraphs_setGD.R'
        'smwrGraphs_setMargin.R' 'smwrGraphs_setMultiPlot.R'
        'smwrGraphs_setPage.R' 'smwrGraphs_setPlot.R'
        'smwrGraphs_strip.blanks.R' 'smwrGraphs_timePlot.R'
        'smwrGraphs_timePretty.R' 'smwrGraphs_transData.R'
        'smwrGraphs_xyPlot.R' 'smwrQW_censoring.R' 'smwrQW_is.na.R'
        'smwrQW_mcenKM.R' 'smwrQW_mcenMLE.R' 'smwrQW_mcenROS.R'
        'smwrQW_mdlMLE.R' 'smwrQW_mdlROS.R' 'smwrQW_pcodeNWISqw.R'
        'smwrQW_x_Arith-censored.R' 'smwrQW_x_Math-censored.R'
        'smwrQW_x_View.r' 'smwrQW_x_add.R' 'smwrQW_x_as.character.R'
        'smwrQW_x_as.data.frame.R' 'smwrQW_x_as.double.R'
        'smwrQW_x_c.R' 'smwrQW_x_censorlevels.R' 'smwrQW_x_censpp.R'
        'smwrQW_x_convert2qw.R' 'smwrQW_x_convertFqw.R'
        'smwrQW_x_dlimit.R' 'smwrQW_x_format.R'
        'smwrQW_x_importNWISqw.R' 'smwrQW_x_importQW.R'
        'smwrQW_x_imputeLessThans.R' 'smwrQW_x_length.R'
        'smwrQW_x_makeColNames.R' 'smwrQW_x_mdlKM.R'
        'smwrQW_x_mdlKMstats.R' 'smwrQW_x_mean.qw.R'
        'smwrQW_x_meanStats.R' 'smwrQW_x_medianStats.R'
        'smwrQW_x_print.censMCT.R' 'smwrQW_x_print.censQuantile.R'
        'smwrQW_x_print.censReg.R' 'smwrQW_x_print.censStats.R'
        'smwrQW_x_print.summary.censReg.R' 'smwrQW_x_printData.R'
        'smwrQW_x_quantile.R' 'smwrQW_x_qw2mcens.R'
        'smwrQW_x_qwCoalesce.R' 'smwrQW_x_ratio.R' 'smwrQW_x_rbindQW.R'
        'smwrQW_x_readNWQLdl.R' 'smwrQW_x_residuals.censReg.R'
        'smwrQW_x_sdlFill.R' 'smwrQW_x_show-censored.R'
        'smwrQW_x_sort.censored.R' 'smwrQW_x_splitQual.R'
        'smwrQW_x_str.R' 'smwrQW_x_subset.R' 'smwrQW_x_summary.R'
        'smwrQW_x_summary.censReg.R' 'smwrQW_x_vcov.censReg.R'
        'smwrQW_x_z%eq%.R' 'smwrStats_rmse.R' 'smwrStats_vif.R'
        'supportFunctions.R' 'zzz.R'
NeedsCompilation: no
Packaged: 2020-03-31 15:59:46 UTC; Erik.Leppo
Repository: CRAN
Date/Publication: 2020-03-31 16:40:03 UTC
Built: R 4.1.0; ; 2020-08-03 11:32:59 UTC; windows
