# Prioritization of Candidate Cancer Subtype Specific Drugs

## Documentation for package ‘SubtypeDrug’ version 0.1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

AccumulateNormal | SubtypeDrug internal function
CalculateSES | SubtypeDrug internal function
Colork | Color
Disease_drugs | Simulated result data
Drugs_CID | Correspondence table of drug label and drug ID in PubCham database
Geneexp | Simulated gene expression data
GeneexpT | Gene expression data for testing
getDrugMatrix | SubtypeDrug internal function
getDrugSpw | SubtypeDrug internal function
isPackageLoaded | SubtypeDrug internal function
OCSSD | Optimizing cancer subtype specific drugs (OCSSD)
plotDrugStructure | Visualize the chemical structure of the drug
plotDScoreHeatmap | Plot a heat map of the normalized drug-disease reverse association scores for cancer samples
plotDSpwHeatmap | Plot heat map of the drug regulated subpathway activity score
plotGlobalGraph | Plot a global graph of the drug
plotSpwNetGraph | Polt a subpathway network graph
ReadClsFile | SubtypeDrug internal function
SpwNetworkData | Subpathway network structure data
Subtype_drugs | Simulation result data
UserDS | Simulated user-defined drug regulator subpathway dataset
UserDST | User-defined drug regulator subpathway dataset for testing
UserGS | Simulated user-defined gene set data
UserGST | User-defined gene set data for testing