# Phylogenetic Comparative Tools for Missing Data and Within-Species Variation

## Documentation for package ‘Rphylopars’ version 0.3.0

- DESCRIPTION file.

## Help Pages

Rphylopars-package | Phylogenetic Comparative Tools for Missing Data and Within-Species Variation
anc.recon | Ultra-fast maximum likelihood ancestral state reconstruction
anova.phylopars.lm | Phylopars regression ANOVA
fast.SSC | Fast Phylogenetic Signal Using Sum of Squared Changes (SSC)
logLik.phylopars | Extract Log_likelihood
logLik.phylopars.lm | Extract Log_likelihood
phylopars | Estimation of phylogenetic and phenotypic covariance parameters
phylopars.lm | Rphylopars regression
print.phylopars | Print phylopars
print.phylopars.lm | Print phylopars.lm
print.SSC | Print SSC
simtraits | Simulate traits for phylopars estimation
summary.phylopars | Phylopars summary
summary.phylopars.lm | phylopars.lm summary
write.phylopars | Write data and tree files for Python phylopars compatability.