RAM-package	RAM-package
alignment	alignment
assist.ado	assist.ado
assist.cca	assist.ordination
assist.NB	assist.NB
assist.ordination	assist.ordination
assist.rda	assist.ordination
col.splitup	col.splitup
combine.OTU	combine.OTU
core.OTU	core.OTU
core.OTU.rank	core.OTU.rank
core.Taxa	core.Taxa
correlation	correlation
data.clust	data.clust
data.revamp	data.revamp
data.subset	OTU.subsets
dissim	dissim
dissim.alleig.plot	dissim.plot
dissim.clust	dissim
dissim.clust.plot	dissim.plot
dissim.eig	dissim
dissim.eig.plot	dissim.plot
dissim.GOF	dissim
dissim.GOF.plot	dissim.plot
dissim.heatmap	dissim.heatmap
dissim.ord	dissim
dissim.ord.plot	dissim.plot
dissim.plot	dissim.plot
dissim.pvar	dissim
dissim.pvar.plot	dissim.plot
dissim.tree	dissim
dissim.tree.plot	dissim.plot
diversity.indices	diversity.indices
envis.NB	envis.NB
evenness	diversity.indices
factor.abundance	factor.abundance
filter.META	filter.META
filter.OTU	filter.OTU
filter.Taxa	filter.Taxa
fread.meta	fread.meta
fread.OTU	fread.OTU
get.rank	get.rank
group.abund.Taxa	group.abund.Taxa
group.abundance	group.abundance
group.abundance.meta	group.abundance.meta
group.diversity	group.diversity
group.heatmap	group.heatmap
group.heatmap.simple	group.heatmap.simple
group.indicators	group.indicators
group.OTU	group.OTU
group.rich	group.rich
group.spatial	group.spatial
group.spec	group.spec
group.Taxa.bar	group.Taxa.bar
group.Taxa.box	group.Taxa.box
group.temporal	group.temporal
group.top.number	top.groups.plot
group.top.percent	top.groups.plot
group.venn	group.venn
ITS1	ITS1_and_ITS2
ITS1/ITS2	ITS1_and_ITS2
ITS2	ITS1_and_ITS2
LCA.OTU	LCA.OTU
location.formatting	location.formatting
match.data	match.data
meta	meta
META.clust	META.clust
network_data	network_data
OTU.cca	OTU.ord
OTU.diversity	OTU.diversity
OTU.ord	OTU.ord
OTU.rarefy	OTU.rarefy
OTU.rda	OTU.ord
OTU.recap	OTU.recap
pcoa.plot	pcoa.plot
percent.classified	percent.classified
phylog_taxonomy	phylog_taxonomy
phylo_taxonomy	phylo_taxonomy
RAM	RAM-package
RAM.border	theme_ggplot
RAM.color	theme_ggplot
RAM.dates	RAM.dates
RAM.factors	RAM.factors
RAM.input.formatting	RAM.input.formatting
RAM.pal	RAM.pal
RAM.plotting	RAM.plotting
RAM.rank.formatting	RAM.rank.formatting
read.meta	read.meta
read.OTU	read.OTU
reformat.taxonomy	valid.taxonomy
reset.META	reset.META
sample.locations	sample.locations
sample.map	sample.map
sample.sites	sample.sites
seq_var	seq_var
shared.OTU	shared.OTU
shared.Taxa	shared.Taxa
tax.abund	tax.abund
tax.fill	tax.fill
tax.split	tax.split
Taxa.cca	Taxa.ord
Taxa.ord	Taxa.ord
Taxa.rda	Taxa.ord
top.groups.plot	top.groups.plot
transpose.LCA	transpose.LCA
transpose.OTU	transpose.OTU
true.diversity	diversity.indices
valid.OTU	valid.OTU
valid.taxonomy	valid.taxonomy
write.data	write.data
