Package: PCRedux
Type: Package
Title: Quantitative Polymerase Chain Reaction (qPCR) Data Mining and
        Machine Learning Toolkit
Version: 1.0-6
Date: 2020-03-06
Authors@R: c(person("Stefan", "Roediger", 
             email = "stefan.roediger@b-tu.de", 
             comment = c(ORCID = "0000-0002-1441-6512"),
             role = c("cre", "aut")),
             person("Michal", "Burdukiewicz", 
             email = "michalburdukiewicz@gmail.com", 
             comment = c(ORCID = "0000-0001-8926-582X"),
             role = c("aut")),
             person("Andrej-Nikolai", "Spiess", 
             email = "a.spiess@uke.de", 
             role = c("aut")),
             person("Konstantin A.", "Blagodatskikh", 
             email = "k.blag@yandex.ru", 
             role = c("aut")),
             person("Dominik", "Rafacz", 
             email = "dominikrafacz@gmail.com", 
             role = c("ctb")))
Description: Extracts features from amplification curve data of quantitative Polymerase Chain Reactions (qPCR) (Pabinger S. et al. (2014) <doi:10.1016/j.bdq.2014.08.002>) for machine learning purposes. Helper functions prepare the amplification curve data for processing as functional data (e.g., Hausdorff distance) or enable the plotting of amplification curve classes (negative, ambiguous, positive). The hookreg() and hookregNL() functions (Burdukiewicz M. et al. (2018) <doi:10.1016/j.bdq.2018.08.001>) can be used to predict amplification curves with an hook effect-like curvature. The pcrfit_single() function can be used to extract features from an amplification curve.
License: MIT + file LICENSE
LazyLoad: yes
LazyData: yes
URL: https://CRAN.R-project.org/package=PCRedux
BugReports: https://github.com/PCRuniversum/PCRedux/issues
Depends: R (>= 3.5.0)
Imports: bcp, changepoint, chipPCR, ecp, fda.usc, MBmca, pbapply,
        pracma, qpcR, robustbase, shiny, stats, utils, zoo
Suggests: DT, FFTrees, knitr, RDML, randomForest, readxl, rmarkdown,
        spelling, testthat, xtable, future, listenv
NeedsCompilation: no
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
RoxygenNote: 7.0.2
Packaged: 2020-03-06 07:34:05 UTC; tux
Author: Stefan Roediger [cre, aut] (<https://orcid.org/0000-0002-1441-6512>),
  Michal Burdukiewicz [aut] (<https://orcid.org/0000-0001-8926-582X>),
  Andrej-Nikolai Spiess [aut],
  Konstantin A. Blagodatskikh [aut],
  Dominik Rafacz [ctb]
Maintainer: Stefan Roediger <stefan.roediger@b-tu.de>
Repository: CRAN
Date/Publication: 2020-03-06 08:10:02 UTC
Built: R 4.1.0; ; 2020-08-03 14:14:02 UTC; windows
