# Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm

## Documentation for package ‘InSilicoVA’ version 1.3.0

- DESCRIPTION file.

## Help Pages

InsilicoVA-package | Perform InSilicoVA algorithm and provide graphical summarization of CSMF and COD distribution.
causetext | Translation list of COD codes
condprob | Conditional probability table used by InterVA-4
condprobnum | Conditional probability values used by InterVA-4
csmf.diag | Convergence test for fitted InSilico model
extract.prob | Obtain conditional probabilities from training data
get.indiv | Get individual COD probabilities from InSilicoVA Model Fits
indivplot | plot aggregated COD distribution
insilico | Implement InSilicoVA methods
insilico.fit | Implement InSilicoVA methods with more flexible customization
insilico.train | Modified InSilicoVA methods with training data
InsilicoVA | Perform InSilicoVA algorithm and provide graphical summarization of CSMF and COD distribution.
physician_debias | Implement physician debias algorithm
plot.insilico | plot CSMF from a "insilico" object
print.insilico | Print method for summarizing InSilicoVA Model Fits
print.insilico_summary | Print method for summarizing InSilicoVA Model Fits
probbase | Conditional probability of InterVA4
probbase3 | Conditional probability of InterVA4.03
RandomPhysician | 100 records of Sample Input together with two simulated physician codes
RandomVA1 | 1000 records of Sample Input
RandomVA2 | 100 records of Sample Input
SampleCategory | Correspondence between InterVA causes and the physician coded cause categories
SamplePhysician | 100 records of Sample debiased physician codes
stackplot | plot grouped CSMF from a "insilico" object
summary.insilico | Summarizing InSilicoVA Model Fits
updateIndiv | Update individual COD probabilities from InSilicoVA Model Fits