FisHiCal-package        Iterative FISH-based Calibration of Hi-C Data
calibHiC                in-silico 100*100 calibrated Hi-C contact
                        matrix
calibrate               Hi-C calibration
conf                    A 3D random configuration of 100 points
findMatchingIndices     Find matching Hi-C bins for FISH probes, using
                        mid-points
getInfoLevelForChr      Compute the information level for a given
                        chromosome after calibration
hic                     in-silico 100*100 Hi-C contact matrix with with
                        5% noise
lsmacof                 3D reconstruction from Hi-C distances
match                   in-silico FISH distances and matching Hi-C
                        frequencies with 5% noise
plotInc                 Plot a spatial inconsistency
prepareCalib            Prepare Hi-C calibration
prepareData             Match FISH distances and Hi-C frequencies for
                        calibration
searchInc               Search for spatial inconsistencies
spatialInc              Spatial inconsistencies detected for loci in
                        fibroblasts chromosome 1
summaryInc              Summarize spatial inconsistencies.
updateCalib             Update a parameter value in the calibration
                        model
