Package: DiPALM
Type: Package
Title: Differential Pattern Analysis via Linear Modeling
Version: 1.0
Date: 2020-04-05
Author: Ryan C. Sartor <sartorry@gmail.com>, Kathleen Greenham <greenham@umn.edu>
Maintainer: Ryan C. Sartor <sartorry@gmail.com>
Description: Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see Kathleen Greenham, Ryan C Sartor, Stevan Zorich, Ping Lou, Todd C Mockler and C. Robertson McClung (2020) <doi:10.1101/2020.04.03.024281>.
License: GPL (>= 2)
Imports: limma, WGCNA, ggplot2
Suggests: edgeR
NeedsCompilation: no
Packaged: 2020-04-30 02:38:10 UTC; ryan
Depends: R (>= 2.10)
Repository: CRAN
Date/Publication: 2020-05-05 09:30:02 UTC
Built: R 4.1.0; ; 2020-08-03 15:17:19 UTC; windows
