# Differential Pattern Analysis via Linear Modeling

## Documentation for package ‘DiPALM’ version 1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

DiPALM-package | DiPALM - Differential Pattern Analysis via Linear Modeling :
AdjustPvalue | Determine p-values based on permutation test results :
BlankPlot | Generate a blank plot window :
BuildLimmaLM | Fit linear models to time-course expression patterns using the limma package :
BuildModMembership | Calculate module membership (kME) for all genes in a time-course data set :
DiPALM | DiPALM - Differential Pattern Analysis via Linear Modeling :
exampleData | Example Data: Data for use with the DiPALM vignette :
ggPlotMultiDensities | Plot multiple density distributions :
PlotTCs | Plot multiple time-course expression patterns for one gene :
PlotTCsRibbon | Plot multiple averaged time-course expression patterns for a group of genes :
testData | Test Data: Data for function testing :