# Generated by roxygen2: do not edit by hand

S3method(dim,de.lorean)
S3method(plot,de.lorean)
S3method(print,de.lorean)
export(Rhat.plot)
export(adjust.by.cell.sizes)
export(analyse.noise.levels)
export(analyse.variance)
export(aov.dl)
export(calc.inducing.pseudotimes)
export(cmp.profiles.plot)
export(create.ordering.ll.fn)
export(de.lorean)
export(default.num.cores)
export(estimate.cell.sizes)
export(estimate.hyper)
export(examine.convergence)
export(expected.sample.var)
export(expr.data.plot)
export(filter_cells)
export(filter_genes)
export(find.best.tau)
export(find.good.ordering)
export(find.smooth.tau)
export(fit.dl)
export(fit.model)
export(fit.model.sample)
export(fit.model.vb)
export(gene.covariances)
export(get.posterior.mean)
export(get_model)
export(held.out.melt)
export(held.out.posterior)
export(held.out.select.genes)
export(inducing.covariance)
export(init.orderings.vs.pseudotimes.plot)
export(is.de.lorean)
export(make.fit.valid)
export(make.predictions)
export(marg.like.plot)
export(melt.expr)
export(optimise.best.sample)
export(orderings.plot)
export(prepare.for.stan)
export(process.posterior)
export(profiles.plot)
export(pseudotime.plot)
export(pseudotimes.from.orderings)
export(pseudotimes.pair.plot)
export(report.file)
export(roughness.test)
export(roughnesses.plot)
export(seriation.find.orderings)
export(tau.offsets.plot)
export(test.fit)
import(Rcpp)
import(dplyr)
import(ggplot2)
import(methods)
import(reshape2)
import(rstantools)
importFrom(rstan,extract)
importFrom(rstan,log_prob)
importFrom(rstan,monitor)
importFrom(rstan,optimizing)
importFrom(rstan,sampling)
importFrom(rstan,sflist2stanfit)
importFrom(rstan,stan)
importFrom(rstan,unconstrain_pars)
importFrom(rstan,vb)
importFrom(stats,aov)
importFrom(stats,as.dist)
importFrom(stats,cmdscale)
importFrom(stats,cor)
importFrom(stats,dgamma)
importFrom(stats,dist)
importFrom(stats,dlnorm)
importFrom(stats,median)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(stats,var)
importFrom(stats,weighted.mean)
importFrom(utils,head)
importFrom(utils,tail)
useDynLib(DeLorean, .registration = TRUE)
