DSAIDE                  DSAIDE: A package to learn about Dynamical
                        Systems Approaches to Infectious Disease
                        Epidemiology
dsaidemenu              The main menu for the DSAIDE package
flu1918data             1918 Influenza mortality data
generate_documentation
                        A helper function which processes and displays
                        the documentation part for each app
generate_fctcall        A helper function that produces a call to a
                        simulator function for specific settings
generate_ggplot         A helper function that takes simulation results
                        and produces ggplot plots
generate_plotly         A helper function that takes simulation results
                        and produces plotly plots
generate_shinyinput     A helper function that takes a model and
                        generates shiny UI elements
generate_text           A helper function that takes result from the
                        simulators and produces text output
norodata                Cases of norovirus during an outbreak
run_model               A function that runs an app for specific
                        settings and processes results for plot and
                        text generation
simulate_directtransmission_ode
                        Simulation of a compartmental infectious
                        disease transmission model illustrating
                        different types of direct transmission
simulate_environmentaltransmission_ode
                        Environmental Transmission model
simulate_evolution_stochastic
                        Stochastic simulation of a compartmental
                        SIR-type model with wild-type and mutant
                        strains and treatment
simulate_fit_flu        Fitting a SIR-type model to flu data
simulate_fit_noro       Fitting a simple SIR type model to norovirus
                        outbreak data
simulate_heterogeneity_ode
                        Simulation of a compartmental infectious
                        disease transmission model with 2 types of
                        hosts
simulate_idcharacteristics_ode
                        Simulation of an infectious disease
                        transmission model with multiple compartments
simulate_idcontrol_ode
                        Simulation of a compartmental infectious
                        disease transmission model including different
                        control mechanisms
simulate_idcontrolmultioutbreak_ode
                        Simulation of a compartmental infectious
                        disease transmission model to study the
                        reproductive number
simulate_idpatterns_ode
                        Simulation of a compartmental infectious
                        disease transmission model including
                        seasonality
simulate_idsurveillance_ode
                        Simulation of a compartmental infectious
                        disease transmission model illustrating the
                        impact of ID surveillance
simulate_maternalimmunity_ode
                        Simulation of a MSEIR model that represents a
                        group of the population that is protected by
                        disease through maternal antibodies
simulate_modelexploration_sir
                        Simulation to illustrate parameter scan of the
                        basic SIR model with births and deaths #'
simulate_multipathogen_ode
                        Simulation of a compartmental infectious
                        disease transmission model with 2 types of
                        pathogens
simulate_parasites_ode
                        Simulation of a compartmental infectious
                        disease transmission model illustrating
                        parasite infection dynamics with intermediate
                        hosts
simulate_reproductivenumber1_ode
                        Basic SIR model
simulate_reproductivenumber2_ode
                        Simulation of a compartmental infectious
                        disease transmission model to study the
                        reproductive number
simulate_seir_stochastic
                        Stochastic simulation of an SEIR-type model
simulate_sir_discrete   Basic discrete time SIR model
simulate_sir_ode        Basic SIR model
simulate_sirdemographic_ode
                        Basic SIR model with births and deaths
simulate_sirdemographic_stochastic
                        Stochastic simulation of an SIR-type model with
                        births and deaths
simulate_usanalysis_sir
                        Simulation to illustrate uncertainty and
                        sensitivity analysis
simulate_vectortransmission_ode
                        Vector transmission model
