Package: BinQuasi
Version: 0.1-6
Date: 2018-07-26
Title: Analyzing Replicated ChIP Sequencing Data Using Quasi-Likelihood
Authors@R: c(
  person("Emily", "Goren", role=c("aut", "cre"), email="emily.goren@gmail.com"),
  person("Steve", "Lund", role="aut", comment="The author of the QuasiSeq package, from which all functions were modified to produce this package."),
  person("Long", "Qu", role="aut", comment="The author of the QuasiSeq package, from which all functions were modified to produce this package."),
  person("Ian", "Marschner", role="aut", comment="The author of glm2::glm.fit2, which was modified slightly leading to glm.fit3 in this package."),
  person("Daniel", "Gerhard", role="aut", comment="The author of mcprofile::orglm.fit, which was modified slightly and used under the same name in this package."), 
  person("R Core Team", role="aut", comment="The author of stats::glm.fit, which was modified slightly leading to glm.fit3 in this package.")
  )
Imports: edgeR, mgcv, pracma, quadprog, Rsamtools, GenomicAlignments,
        GenomicRanges, IRanges, csaw(>= 1.12.0), SummarizedExperiment,
        BiocGenerics, S4Vectors, RMySQL
Suggests: nleqslv, knitr, rmarkdown
Description: Identify peaks in ChIP-seq data with biological replicates using a one-sided quasi-likelihood ratio test in quasi-Poisson or quasi-negative binomial models.
License: GPL (>= 2)
NeedsCompilation: yes
Maintainer: Emily Goren <emily.goren@gmail.com>
URL: https://github.com/emilygoren/BinQuasi
BugReports: https://github.com/emilygoren/BinQuasi/issues
Author: Emily Goren [aut, cre],
  Steve Lund [aut] (The author of the QuasiSeq package, from which all
    functions were modified to produce this package.),
  Long Qu [aut] (The author of the QuasiSeq package, from which all
    functions were modified to produce this package.),
  Ian Marschner [aut] (The author of glm2::glm.fit2, which was modified
    slightly leading to glm.fit3 in this package.),
  Daniel Gerhard [aut] (The author of mcprofile::orglm.fit, which was
    modified slightly and used under the same name in this package.),
  R Core Team [aut] (The author of stats::glm.fit, which was modified
    slightly leading to glm.fit3 in this package.)
RoxygenNote: 6.0.1
VignetteBuilder: knitr
Packaged: 2018-07-27 06:12:14 UTC; emilygoren
Repository: CRAN
Date/Publication: 2018-07-27 08:00:03 UTC
Built: R 4.1.0; x86_64-w64-mingw32; 2020-08-03 08:21:52 UTC; windows
Archs: i386, x64
