# Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating

## Documentation for package ‘BayLum’ version 0.1.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

BayLum-package | Chronological Bayesian Models Integrating Optically Stimulated Luminescence and C-14 Dating
AgeC14_Computation | Bayesian analysis for C-14 age estimations of various samples
AgeS | Output of 'AgeS_Computation' function for the samples: "GDB5" and "GDB3"
AgeS_Computation | Bayesian analysis for the OSL age estimation of various samples
Age_Computation | Bayesian analysis for the OSL age estimation of one sample
Age_OSLC14 | Bayesian analysis for age estimation of OSL measerments and C-14 ages of various samples
AtmosphericNorth_CalC14 | Atmospheric North data for calibration of 14C age
AtmosphericSouth_CalC14 | Atmospheric South data for calibration of 14C age
BayLum | Chronological Bayesian Models Integrating Optically Stimulated Luminescence and C-14 Dating
combine_DataFiles | Combine objects generated by Generate_DataFile and Generate_DataFile_MG
Concat_DataFile | Combine objects generated by Generate_DataFile and Generate_DataFile_MG
DATA1 | DATA of sample named GDB3
DATA2 | DATA on sample named GDB5
DATA3 | DATA of sample named FER1
DATA_C14 | C14 cal age estiamte and its error
Generate_DataFile | Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis
Generate_DataFile_MG | Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements, a list of luminescence data and information before statistical analysis
LT_RegenDose | Plots Lx/Tx as a function of the regenerative dose
Marine_CalC14 | Marine data for calibration of 14C age
MCMCsample | MCMC sample from the posterior distribution of the dataset GDB5
ModelC14 | Likelihood of C14 samples for JAGS models use in 'Age_OSLC14'
ModelOSL | Likelihood of OSL samples for JAGS models use in 'Age_OSLC14'
ModelPrior | Prior for JAGS models use in 'Age_OSLC14'
Model_Age | JAGS models use in 'Age_Computation'
Model_AgeC14 | JAGS models use in 'AgeC14_Computation'
Model_AgeS | JAGS models use in 'AgeS_Computation'
Model_Palaeodose | JAGS models use in 'Palaeodose_Computation'
Palaeodose_Computation | Bayesian analysis for the palaeodose estimation of various samples
plot_Ages | Create age plot
plot_MCMC | Plot MCMC trajectories and posterior distributions
plot_Scatterplots | Display Scatter Plot Matrix of the Bayesian Age Results
ScatterSamples | Display Scatter Plot Matrix of the Bayesian Age Results
SCMatrix | Definition of the stratigraphic constraint matrix
SC_Ordered | Create stratigraphically ordered sample matrix