AugmentSigMatrix        Make an augmented signature matrix
LM22                    Leukocyte 22 data matrix
Licenses                Licenses required by Celgene legal
MGSM27                  Myeloma Genome Signature Matrix 27
SVMDECON                Support vector machine deconvolution
buildSeed               Build a deconvolution seed matrix
buildSpilloverMat       Build a spillover matrix
calcAcc                 Calculate prediction accuracy
clustWspillOver         Cluster with spillover
collapseCellTypes       Collapse cell types
estCellCounts.nPass     Deconvolve with an n-pass spillover matrix
estCellPercent          Wrapper for deconvolution methods
estCellPercent.DCQ      DCQ Deconvolution
estCellPercent.DeconRNASeq
                        DeconRNASeq deconvolution
estCellPercent.nnls     Non-negative least squares deconvolution
estCellPercent.proportionsInAdmixture
                        WGCNA::proportionsInAdmixture deconvolution
estCellPercent.spillOver
                        Estimate cell percentage from spillover
estCellPercent.svmdecon
                        SVMDECON deconvolution
gListFromRF             Build a gList using random forest
getF1mcc                Get f1 / mcc
getLM22cells            LM22 look up table
hierarchicalClassify    Hierarchical Deconvolution
hierarchicalSplit       Build hierarchical cell clusters.
loadMGSM27              Load MGSM27
loadModMap              LM22 to xCell LUT
missForest.par          Use parallel missForest to impute missing
                        values.
plotKappas              Plot condition numbers
rankByT                 Rank genes for each cell type
remakeLM22p             Make an Augmented Signature Matrix
scSample                Build groupSize pools according to cellIDs
shrinkByKappa           Calculate conditions numbers for signature
                        subsets
shrinkSigMatrix         Shrink a signature matrix
spillToConvergence      Spillover to convergence
splitSCdata             Split a single cell dataset into multiple sets
weightNorm              SVMDECONV helper function
