Package: ACSNMineR
Type: Package
Title: Gene Enrichment Analysis from ACSN Maps or GMT Files
Version: 0.16.8.25
Authors@R: c(person("Paul", "Deveau", role = c("aut", "cre"),
		     email = "paul.deveau@curie.fr"),
			 person("Eric", "Bonnet",role = "aut",
			 email = "eric.bonnet@curie.fr"))
Description: Compute and represent gene set enrichment or depletion from your
    data based on pre-saved maps from the Atlas of Cancer Signalling Networks (ACSN)
    or user imported maps. User imported maps must be complying with the GMT format
    as defined by the Broad Institute, that is to say that the file should be tab-
    separated, that the first column should contain the module name, the second
    column can contain comments that will be overwritten with the number of genes
    in the module, and subsequent columns must contain the list of genes (HUGO
    symbols; tab-separated) inside the module. The gene set enrichment can be run
    with hypergeometric test or Fisher exact test, and can use multiple corrections.
    Visualization of data can be done either by barplots or heatmaps.
Depends: R (>= 3.1.0),ggplot2, gridExtra,scales,
Suggests: rmarkdown, knitr
License: GPL-2
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-09-01 12:45:27 UTC; User
Author: Paul Deveau [aut, cre],
  Eric Bonnet [aut]
Maintainer: Paul Deveau <paul.deveau@curie.fr>
Repository: CRAN
Date/Publication: 2016-09-01 17:30:55
Built: R 4.1.0; ; 2020-08-03 12:27:44 UTC; windows
