Open Population Capture-Recapture


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Documentation for package ‘openCR’ version 1.4.1

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openCR-package Open Population Capture-Recapture Models
age.matrix Session-specific Ages
AIC.openCR Compare openCR Models
AIC.openCRlist Compare openCR Models
bd.array Summarise Non-spatial Open-population Data
classMembership Class Membership Probability for Mixture Models
classMembership.openCR Class Membership Probability for Mixture Models
cloned.fit Cloning to Evaluate Identifiability
cyclic.fit Internal Functions
derived.openCR Derived Parameters From openCR Models
derived.openCRlist Derived Parameters From openCR Models
dipperCH Dippers
extractFocal Moving Window Functions
FebpossumCH Orongorongo Valley Brushtail Possums
fieldvoleCH Kielder Field Voles
gonodontisCH Gonodontis Moths
JS.counts Summarise Non-spatial Open-population Data
JS.direct Jolly-Seber Estimates
LLsurface Plot Likelihood Surface
LLsurface.openCR Plot Likelihood Surface
logLik.openCR Compare openCR Models
m.array Summarise Non-spatial Open-population Data
make.kernel Discrete Movement Kernel
make.table Tabulate Estimates From Multiple Models
microtusCH Patuxent Meadow Voles
microtusFCH Patuxent Meadow Voles
microtusFMCH Patuxent Meadow Voles
microtusMCH Patuxent Meadow Voles
microtusRDCH Patuxent Meadow Voles
moving.fit Moving Window Functions
openCR Open Population Capture-Recapture Models
openCR.design Design Data for Open population Models
openCR.esa Derived Parameters From openCR Models
openCR.fit Fit Open Population Capture-Recapture Model
openCR.make.newdata Create Default Design Data
openCR.pdot Derived Parameters From openCR Models
openCRlist Fit Multiple openCR Models
par.openCR.fit Fit Multiple openCR Models
PCH1 Internal Functions
PCH1secr Internal Functions
plot.derivedopenCR Plot Derived Estimates
plot.kernel Discrete Movement Kernel
plot.openCR Plot Estimates
plotKernel Plot Movement Kernel
pradelloglik Internal Functions
predict.openCR openCR Model Predictions
predict.openCRlist openCR Model Predictions
primarysessions Data Manipulation
print.derivedopenCR Print Method for Derived Estimates
print.openCR Print or Summarise openCR Object
prwi Internal Functions
prwisecr Internal Functions
read.inp Import Data from RMark Input Format
rev.capthist Reverse Primary Sessions
runsim.nonspatial Simulate Capture Histories
runsim.RMark Simulate Capture Histories
runsim.spatial Simulate Capture Histories
secondarysessions Data Manipulation
sim.nonspatial Simulate Capture Histories
squeeze Unique Capture Histories
summary.kernel Discrete Movement Kernel
summary.openCR Print or Summarise openCR Object
sumsims Simulate Capture Histories
ucare.cjs Goodness-of-fit tests for the Cormack-Jolly-Seber model
unsqueeze Unique Capture Histories