Cell-Type-Specific Association Testing in Bulk Omics Experiments


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Documentation for package ‘omicwas’ version 0.7.0

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ctassoc Cell-Type-Specific Association Testing
ctcisQTL Cell-Type-Specific QTL analysis
ctRUV Remove Unwanted Variations prior to applying ctassoc
GSE42861small Small Subset of GSE42861 Dataset From GEO
GSE79262small Small Subset of GSE79262 Dataset From GEO
GTExsmall Small Subset of GTEx Dataset
rrs.fit Fitting reduced-rank ridge regression with given rank and shrinkage penalty