Generalized Dissimilarity Modeling


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Documentation for package ‘gdm’ version 1.4.2

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gdm-package Overview of the functions in the gdm package
formatsitepair Converts Common Biological (Response) and Environmental (Predictor) Data Formats to a GDM Site-Pair Table
gdm Fit a Generalized Dissimilarity Model to Tabular Site-Pair Data
gdm.transform Transform Environmental Data Using a Generalized Dissimilarity Model
gdm.varImp Quantify model significance and variable importance/significance in gdm using matrix permutation.
gdmDissim A sample biological dissimilarity matrix for use in GDM examples
gdmExpData Species and environmental data used in GDM examples
isplineExtract Extract I-spline Values From a gdm Object.
plot Plot model fit and I-splines from a generalized dissimilarity model
plot.gdm Plot model fit and I-splines from a generalized dissimilarity model
plotUncertainty Plot I-splines with error bands using bootstrapping.
predict Predict Biological Dissimilarities Between Sites or Times Using a Generalized Dissimilarity Model
predict.gdm Predict Biological Dissimilarities Between Sites or Times Using a Generalized Dissimilarity Model
removeSitesFromSitePair Remove Random Sites from Site-Pair Table
stackedVars Worldclim climate variables used to fit GDM in examples
summary Summarize a Fitted Generalized Dissimilarity Model
summary.gdm Summarize a Fitted Generalized Dissimilarity Model