eNetXplorer-package |
explores elastic net families for generalized linear models |
breastCancerSurv |
gene signature for breast cancer survival |
eNetXplorer |
generates family of elastic net models for different alphas |
export |
generates plain text files from eNetXplorer object |
H1N1_Flow |
longitudinal cell population frequencies and titer response upon H1N1 vaccination |
Leukemia_miR |
microRNA expression of acute leukemia phenotypes |
Leuk_miR_filt |
microRNA expression of acute leukemia phenotypes (filtered dataset) |
Leuk_miR_full |
microRNA expression of acute leukemia phenotypes (full dataset) |
plot |
generates plots from eNetXplorer object |
plot.eNetXplorer |
generates plots from eNetXplorer object |
plotContingency |
generates plot of response vs out-of-bag predictions across classes |
plotFeatureCaterpillar |
generates caterpillar plot of feature statistics |
plotFeatureHeatmap |
generates heatmap plot of feature statistics |
plotKaplanMeier |
generates Kaplan-Meier plot of survival probability as a function of time |
plotLambdaVsQF |
generates plot of quality function across 'lambda' |
plotMeasuredVsOOB |
generates plot of response vs out-of-bag predictions across instances |
plotSummary |
generates summary plots of model performance across alpha |
plotSurvROC |
generates time-dependent ROC plots from Cox predicted risks |
QuickStartEx |
synthetic dataset |
summary |
generates list of model statistics |
summary.eNetXplorer |
generates list of model statistics |
summaryPDF |
generates PDF report with summary of main results |