Prioritization of Candidate Cancer Subtype Specific Drugs


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Documentation for package ‘SubtypeDrug’ version 0.1.1

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AccumulateNormal SubtypeDrug internal function
CalculateSES SubtypeDrug internal function
Colork Color
Disease_drugs Simulated result data
Drugs_CID Correspondence table of drug label and drug ID in PubCham database
Geneexp Simulated gene expression data
GeneexpT Gene expression data for testing
getDrugMatrix SubtypeDrug internal function
getDrugSpw SubtypeDrug internal function
isPackageLoaded SubtypeDrug internal function
OCSSD Optimizing cancer subtype specific drugs (OCSSD)
plotDrugStructure Visualize the chemical structure of the drug
plotDScoreHeatmap Plot a heat map of the normalized drug-disease reverse association scores for cancer samples
plotDSpwHeatmap Plot heat map of the drug regulated subpathway activity score
plotGlobalGraph Plot a global graph of the drug
plotSpwNetGraph Polt a subpathway network graph
ReadClsFile SubtypeDrug internal function
SpwNetworkData Subpathway network structure data
Subtype_drugs Simulation result data
UserDS Simulated user-defined drug regulator subpathway dataset
UserDST User-defined drug regulator subpathway dataset for testing
UserGS Simulated user-defined gene set data
UserGST User-defined gene set data for testing