AllPairsQuartetAgreement | Triplet and quartet distances with tqDist |
AllPairsQuartetDistance | Triplet and quartet distances with tqDist |
AllPairsTripletDistance | Triplet and quartet distances with tqDist |
AllQuartets | List all quartets |
BipartitionPoints | Plot tree differences on ternary plots |
BipartitionStatus | Matching partitions |
CompareBipartitions | Compare status of splits |
CompareQuartets | Compare quartet states by explicit enumeration |
CompareSplits | Compare status of splits |
Distances | Triplet and quartet distances with tqDist |
DoNotConflict | Tree Similarity Metrics |
ExplicitlyAgree | Tree Similarity Metrics |
ManyToManyQuartetAgreement | Status of quartets |
MarczewskiSteinhaus | Tree Similarity Metrics |
OneToManyQuartetAgreement | Triplet and quartet distances with tqDist |
PairsQuartetDistance | Triplet and quartet distances with tqDist |
PairsTripletDistance | Triplet and quartet distances with tqDist |
PlotQuartet | Plot quartet on a tree topology |
QuartetAgreement | Triplet and quartet distances with tqDist |
QuartetDistance | Triplet and quartet distances with tqDist |
QuartetDivergence | Tree Similarity Metrics |
QuartetPoints | Plot tree differences on ternary plots |
QuartetState | Quartet State(s) |
QuartetStates | Quartet State(s) |
QuartetStatus | Status of quartets |
ResolvedQuartets | Count resolved quartets |
ResolvedTriplets | Count resolved quartets |
RobinsonFoulds | Tree Similarity Metrics |
SemiStrictJointAssertions | Tree Similarity Metrics |
SharedBipartitionStatus | Matching partitions |
SharedQuartetStatus | Status of quartets |
SharedSplitStatus | Matching partitions |
SimilarityMetrics | Tree Similarity Metrics |
SingleTreeQuartetAgreement | Status of quartets |
SplitPoints | Plot tree differences on ternary plots |
SplitStatus | Matching partitions |
sq_trees | Eighteen trees |
SteelPenny | Tree Similarity Metrics |
StrictJointAssertions | Tree Similarity Metrics |
SymmetricDifference | Tree Similarity Metrics |
SymmetricDifferenceLineEnds | Plot contours of equal symmetric difference on a ternary plot |
SymmetricDifferenceLines | Plot contours of equal symmetric difference on a ternary plot |
TQAE | tqDist wrapper |
TQDist | tqDist wrapper |
TripletDistance | Triplet and quartet distances with tqDist |
TwoListQuartetAgreement | Status of quartets |