Bayesian Seemingly Unrelated Regression


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Documentation for package ‘BayesSUR’ version 1.2-1

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BayesSUR main function of the package
BayesSUR_internal BayesSUR_internal
coef.BayesSUR extract the posterior mean of the coefficients of a "BayesSUR" class object
elpd measure the prediction accuracy by the expected log pointwise predictive density
example_eQTL Simulated data set to mimic a small expression quantitative trait loci (eQTL) example
example_GDSC Preprocessed data set to mimic a small pharmacogenetic example
fitted.BayesSUR fitted response values corresponds to the posterior mean estimates
get.estimator extract the posterior mean of the parameters
plot.BayesSUR create a selection of plots for a "BayesSUR" class object
plot.CPO plot the conditional predictive ordinate
plot.estimator plot the posterior mean estimators
plot.Manhattan plot Manhattan-like plots for marginal posterior inclusion probabilities (mPIP) and numbers of responses of association for predictors
plot.MCMCdiag show trace plots and diagnostic density plots
plot.network plot the network representation of the associations between responses and predictors
plot.response.graph plot the estimated graph for multiple response variables
predict.BayesSUR predict responses corresponding to the posterior mean of the coefficients, return posterior mean of coefficients or indices of nonzero coefficients
print.BayesSUR print a short summary of the Bayesian Seemingly Unrelated Regressions Fits
summary.BayesSUR summarizing Bayesian Seemingly Unrelated Regressions Fits
targetGene targetGene