# Saving Treatment Plans

#### John Mount

#### 2020-03-10

You can save and load treatment plans. Note: treatments plans are intended to be used with the version of `vtreat` they were constructed with (though we try to make plans forward-compatible). So it is good idea to have procedures to re-build treatment plans.

The easiest way to save `vtreat` treatment plans is to use `R`’s built in `saveRDS` function.

To save in a file:

    library("vtreat")
    dTrainC <- data.frame(x=c('a','a','a','b','b',NA,NA),
                          z=c(1,2,3,4,NA,6,NA),
                          y=c(FALSE,FALSE,TRUE,FALSE,TRUE,TRUE,TRUE))
    treatmentsC <- designTreatmentsC(dTrainC, colnames(dTrainC),
                                     'y', TRUE,
                                     verbose= FALSE)

    fileName = paste0(tempfile(c('vtreatPlan')), '.RDS')
    saveRDS(treatmentsC,fileName)
    rm(list=c('treatmentsC'))

And then to restore and use.

    library("vtreat")
    treatmentsC <- readRDS(fileName)

    dTestC <- data.frame(x=c('a','b','c',NA),z=c(10,20,30,NA))
    dTestCTreated <- prepare(treatmentsC, dTestC, pruneSig= c())

    # clean up
    unlink(fileName)

Treatment plans can also be stored as binary blobs in databases. Using ideas from here gives us the following through the `DBI` interface.

    con <- NULL
    if (requireNamespace('RSQLite', quietly = TRUE) &&
        requireNamespace('DBI', quietly = TRUE)) {
      library("RSQLite")
      con <- dbConnect(drv=SQLite(), dbname=":memory:")
      # create table
      dbExecute(con, 'create table if not exists treatments
                     (key varchar(200) primary key,
                      treatment blob)')
      # wrap data
      df <- data.frame(
        key='treatmentsC',
        treatment = I(list(serialize(treatmentsC, NULL))))
      # Clear any previous version
      dbExecute(con,
                   "delete from treatments where key='treatmentsC'")
      # insert treatmentplan
      # depreciated
      # dbGetPreparedQuery(con,
      #                    'insert into treatments (key, treatment) values (:key, :treatment)',
      #                    bind.data=df)
      dbExecute(con,
                 'insert into treatments (key, treatment) values (:key, :treatment)',
                 params=df)
      constr <- paste(capture.output(print(con)),collapse='\n')
      paste('saved to db: ', constr)
    }

    ## Warning: Factors converted to character

    ## [1] "saved to db:  <SQLiteConnection>\n  Path: :memory:\n  Extensions: TRUE"

    rm(list= c('treatmentsC', 'dTestCTreated'))

And we can read the treatment back in as follows.

    if(!is.null(con)) {
      treatmentsList <- lapply(
        dbGetQuery(con,
                   "select * from treatments where key='treatmentsC'")$treatment,
        unserialize)
      treatmentsC <- treatmentsList[[1]]
      dbDisconnect(con)
      dTestCTreated <- prepare(treatmentsC, dTestC, pruneSig= c())
      print(dTestCTreated)
    }

    ##       x_catP     x_catB    z z_isBAD x_lev_NA x_lev_x_a x_lev_x_b
    ## 1 0.42857143 -0.9807709 10.0       0        0         1         0
    ## 2 0.28571429 -0.2876737 20.0       0        0         0         1
    ## 3 0.07142857  0.0000000 30.0       0        0         0         0
    ## 4 0.28571429  9.6158638  3.2       1        1         0         0