.check_coef             Check the validity of a vector of coefficients
.check_varcov           Check the validity of a vector of coefficients
.dummy_ctm              Dummy ctm model with random effects as offsets
.mlt_data               Extract information from an mlt model
.model_name             Create name for a specific tramME model
.nobars                 Remove random effects terms
.parallel_default       Boilerplate parallel-handling function, copied
                        from 'lme4'
.paridx                 Match parameters with parameter groups and
                        indeces
.re_data                Create RE data
.re_format              Reshape unformatted random effects vectors
.re_size                Calculates the size of the random effect vector
                        implied by the model and the data
.renames                Return names for random effects parameters
.sim_re                 Simulates random effects vector from a tramME
                        object
.subbars                My own version of lme4::subbar
.tramME                 General ME tram model
BoxCoxME                ME version of tram::BoxCox
ColrME                  ME version of tram::Colr
CoxphME                 ME version of tram::Coxph
LehmannME               ME version of tram::Lehmann
LmME                    ME version of tram::Lm
PolrME                  ME version of tram::Polr
SurvregME               ME version of tram::Survreg
VarCorr.LmME            Variances and correlation matrices of random
                        effects of an LmME object
VarCorr.tramME          Variances and correlation matrices of random
                        effects
anova.tramME            Comparison of nested tramME models.
coef.LmME               Extract the coefficients of the fixed effects
                        terms of an LmME model.
coef.tramME             Extract the coefficients of the fixed effects
                        terms.
coef<-.tramME           Set coefficients of a tramME model.
confint.LmME            Confidence intervals for LmME model parameters
confint.tramME          Confidence intervals for tramME model
                        parameters
logLik.tramME           Get the log-likelihood of the model
plot.trafo.tramME       Plotting method for 'trafo.tramME' objects
plot.tramME             Plotting method for tramME objects
predict.tramME          Predict method for tramME objects
print.VarCorr.tramME    Print method for the variance-correlation
                        parameters of a tramME object
print.anova.tramME      Printing 'anova.tramME' table
print.simulate.tramME   Print method for 'simulate.tramME' objects
print.summary.tramME    Print method for tramME model summary
print.tramME            Print tramME model
ranef.LmME              Extract the conditional modes of random effects
                        of an LmME model
ranef.tramME            Extract the conditional modes and conditional
                        variances of random effects
refit.tramME            Refit the model with a new response vector
sigma.LmME              Extract the SD of the error term of an LmME
                        model.
simulate.tramME         Simulate outcome variable from an estimated
                        model
summary.tramME          Summary method for tramME model
trafo                   Generic method for extracting baseline
                        transformations
trafo.tramME            Get the baseline transformation function and
                        its confidence interval
varcov                  Generic method for 'varcov'
varcov.tramME           Extract the variance-covariance matrix of the
                        random effects
varcov<-                Generic method for '"varcov<-"'
varcov<-.tramME         Set the values of the random effects covariance
                        matrices of a tramME model.
variable.names.tramME   Return variable names.
vcov.LmME               Get the variance-covariance matrix of the
                        parameters of an LmME model
vcov.tramME             Calculate the variance-covariance matrix of the
                        parameters
