# Semantic Annotation and Discoverability System for R-Based Artifacts

## Documentation for package ‘trackr’ version 0.10.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

A C D E F G H I J K L M N O P R S T U misc

## -- A --

annotationText | Accessor method for the annotation text (slot "annotationtext") of the plot object.
annotationText-method | Accessor method for the annotation text (slot "annotationtext") of the plot object.
as.list | Convert objects to lists
as.list-method | Convert objects to lists
as.list.FeatureSet | Convert objects to lists
as.list.ScriptNodeInfo | Convert objects to lists

## -- C --

codeInfo | Accessors for the code analysis information of FeatureSet objects
codeInfo-method | Accessors for the code analysis information of FeatureSet objects
codeInfo<- | Accessors for the code analysis information of FeatureSet objects
codeInfo<--method | Accessors for the code analysis information of FeatureSet objects
coordSystem | Accessor method for the coordinate system (slot "coordsys") of the plot object.
coordSystem-method | Accessor method for the coordinate system (slot "coordsys") of the plot object.

## -- D --

dataLabels | Accessors for the axis labels PlotFeatureSet objects
dataLabels-method | Accessors for the axis labels PlotFeatureSet objects
dataLabels<- | Accessors for the axis labels PlotFeatureSet objects
dataLabels<--method | Accessors for the axis labels PlotFeatureSet objects
dataNames | Accessor method for the variable names of the plot object. Not an exported method.
dataTypes | Accessor method for the variable types (slot "vartypes") of the plot object.
dataTypes-method | Accessor method for the variable types (slot "vartypes") of the plot object.
defaultTDB | default TrackrDB
describePackage | Accessor method for ObjFeatureSet "analysispkg" slot.
describePackage-method | Accessor method for ObjFeatureSet "analysispkg" slot.
DFFeatureSet | FeatureSet contstructors
DFFeatureSet-class | FeatureSet (and Sub)-Classes
DocCollectionRef | Reference to a DocCollection
DocCollectionRef-class | Reference to a DocCollection

## -- E --

editTags | Accessors for the tags of FeatureSet objects
editTags-method | Accessors for the tags of FeatureSet objects

## -- F --

FeatureSet-class | FeatureSet (and Sub)-Classes
findRecords | Primary high-level API functions for Trackr Databases
fullData | Accessor method for the data (slot "data") that is used in plotting.
fullData-method | Accessor method for the data (slot "data") that is used in plotting.

## -- G --

generateTags | customizing-metadata
generateTags-method | customizing-metadata
geomObject | Accessors for the geom of GGplotFeatureSet objects
geomObject-method | Accessors for the geom of GGplotFeatureSet objects
geomObject<- | Accessors for the geom of GGplotFeatureSet objects
geomObject<--method | Accessors for the geom of GGplotFeatureSet objects
gg | ggplot S4 classes
gg-class | ggplot S4 classes
ggplot-class | ggplot S4 classes
GGplotFeatureSet | FeatureSet contstructors
GGplotFeatureSet-class | FeatureSet (and Sub)-Classes
GraphicsFeatureSet | FeatureSet contstructors
GraphicsFeatureSet-class | FeatureSet (and Sub)-Classes
graphSys | Accessor method for PlotFeatureSet "package" slot.
graphSys-method | Accessor method for PlotFeatureSet "package" slot.
groupInfo | Accessor method for the panel and other grouping information (slot "grouping") of the plot object.
groupInfo-method | Accessor method for the panel and other grouping information (slot "grouping") of the plot object.
gTree | ggplot S4 classes
gTree-class | ggplot S4 classes

## -- H --

hasLegend | Accessor method for the legend indicator (slot "haslegend") of the plot object.
hasLegend-method | Accessor method for the legend indicator (slot "haslegend") of the plot object.

## -- I --

img_dir | options extraction
img_dir-method | options extraction
img_ext | options extraction
img_ext-method | options extraction
insert_record | Backend-interface API
insert_record-method | Backend-interface API

## -- J --

JSONBackend | JSON backend for trackr
jsonbackend | JSON backend for trackr
JSONBackend-class | JSON backend for trackr
jsonTDB | Convenience constructors for specific trackr backends

## -- K --

knit_and_record | Knit and record an Rmd, Rnw, etc file

## -- L --

ListBackend | Reference to a DocCollection
listbackend | Reference to a DocCollection
ListBackend-class | Reference to a DocCollection
listTDB | Convenience constructors for specific trackr backends

## -- M --

makeFeatureSet | Construct an ObjFeatureSet.
makeFeatureSet-method | Construct an ObjFeatureSet.
make_image_files | Make image files for a featureset
make_image_files-method | Make image files for a featureset
manifestFromRecord | Generate a (switchr) Seed Manifest from a Record

## -- N --

names<--method | Reference to a DocCollection
ndoc-method | Reference to a DocCollection
ndoc-method | Number of docs in a TrackrDB
nLayers | Accessors for the number of layers of GGplotFeatureSet objects
nLayers-method | Accessors for the number of layers of GGplotFeatureSet objects
nLayers<- | Accessors for the number of layers of GGplotFeatureSet objects
nLayers<--method | Accessors for the number of layers of GGplotFeatureSet objects
nObs | Accessor method for the number of observations (slot "nobs") of the plot object.
nObs-method | Accessor method for the number of observations (slot "nobs") of the plot object.

## -- O --

objCode | Accessors for the code of FeatureSet objects
objCode-method | Accessors for the code of FeatureSet objects
objCode<- | Accessors for the code of FeatureSet objects
objCode<--method | Accessors for the code of FeatureSet objects
ObjFeatureSet | FeatureSet contstructors
ObjFeatureSet-class | FeatureSet (and Sub)-Classes

## -- P --

parseCode | Parse result creation code
parseCode-method | Parse result creation code
plot-method | Display the plot object owned by PlotFeatureSet objects and subclasses thereof.
PlotFeatureSet | FeatureSet contstructors
PlotFeatureSet-class | FeatureSet (and Sub)-Classes
position | Accessors for the position of GGplotFeatureSet objects
position-method | Accessors for the position of GGplotFeatureSet objects
position<- | Accessors for the position of GGplotFeatureSet objects
position<--method | Accessors for the position of GGplotFeatureSet objects
prep_for_backend | Backend-interface API
prep_for_backend-method | Backend-interface API
print.gTree | Print method for an object of class gTree.

## -- R --

record | Primary high-level API functions for Trackr Databases
recordFiles | Primary high-level API functions for Trackr Databases
regDateTime | Accessors for the registration Date/Time of FeatureSet objects
regDateTime-method | Accessors for the registration Date/Time of FeatureSet objects
regDateTime<- | Accessors for the registration Date/Time of FeatureSet objects
regDateTime<--method | Accessors for the registration Date/Time of FeatureSet objects
remove_record | Backend-interface API
remove_record-method | Backend-interface API
RmdFeatureSet | FeatureSet contstructors
RmdFeatureSet-class | FeatureSet (and Sub)-Classes
rmRecord | Primary high-level API functions for Trackr Databases
RStudioExtras | RStudioExtras class
RStudioExtras-class | RStudioExtras class

## -- S --

saveBasicPlot | Save the plot object owned by an object of class/superclass PlotFeatureSet as an image.
saveBasicPlot-method | Save the plot object owned by an object of class/superclass PlotFeatureSet as an image.
show-method | FeatureSet (and Sub)-Classes
solrTDB | Convenience constructors for specific trackr backends
statTransform | Accessors for the stat(s) of GGplotFeatureSet objects
statTransform-method | Accessors for the stat(s) of GGplotFeatureSet objects
statTransform<- | Accessors for the stat(s) of GGplotFeatureSet objects
statTransform<--method | Accessors for the stat(s) of GGplotFeatureSet objects
summary-method | Summarize an object of class/superclass PlotFeatureSet

## -- T --

tags | Accessors for the tags of FeatureSet objects
tags-method | Accessors for the tags of FeatureSet objects
tags<- | Accessors for the tags of FeatureSet objects
tags<--method | Accessors for the tags of FeatureSet objects
titles | Accessors for the title(s) of FeatureSet objects
titles-method | Accessors for the title(s) of FeatureSet objects
titles<- | Accessors for the title(s) of FeatureSet objects
titles<--method | Accessors for the title(s) of FeatureSet objects
trackrAddin | RStudio addin/Shiny app for artifact discovery
TrackrDB | Trackr database
TrackrDB-class | Trackr database
TrackrOptions | Trackr configuration options
TrackrOptions-class | Trackr configuration options
trackropts | trackr options environment
trackr_knit_env | Internal details
trackr_lookup | Backend-interface API
trackr_lookup-method | Backend-interface API
trackr_options | options extraction
trackr_options-method | options extraction
trackr_search | Backend-interface API
trackr_search-method | Backend-interface API
trackr_write | Backend-interface API
trackr_write-method | Backend-interface API
trellis | ggplot S4 classes
trellis-class | ggplot S4 classes
TrellisFeatureSet | FeatureSet contstructors
TrellisFeatureSet-class | FeatureSet (and Sub)-Classes

## -- U --

uniqueID | Accessor methods for "uniqueid" of FeatureSet objects
uniqueID-method | Accessor methods for "uniqueid" of FeatureSet objects
uniqueID<- | Accessor methods for "uniqueid" of FeatureSet objects
uniqueID<--method | Accessor methods for "uniqueid" of FeatureSet objects
user | Accessors for the "user" of FeatureSet objects
user-method | Accessors for the "user" of FeatureSet objects
user<- | Accessors for the "user" of FeatureSet objects
user<--method | Accessors for the "user" of FeatureSet objects

## -- misc --

.DFFeatureSet | FeatureSet (and Sub)-Classes
.docrefclass | Reference to a DocCollection
.FeatureSet | FeatureSet (and Sub)-Classes
.GGplotFeatureSet | FeatureSet (and Sub)-Classes
.GraphicsFeatureSet | FeatureSet (and Sub)-Classes
.ObjFeatureSet | FeatureSet (and Sub)-Classes
.PlotFeatureSet | FeatureSet (and Sub)-Classes
.RmdFeatureSet | FeatureSet (and Sub)-Classes
.TrellisFeatureSet | FeatureSet (and Sub)-Classes