Package: rEDM
Type: Package
Title: Applications of Empirical Dynamic Modeling from Time Series
Version: 1.2.3
Authors@R: c(person("Hao", "Ye", role = c("aut"), 
                    email = "hao.ye@weecology.org", 
                    comment = c(ORCID = "0000-0002-8630-1458")), 
             person("Adam", "Clark", role = c("aut"), 
                    comment = c(ORCID = "0000-0002-8843-3278")), 
             person("Ethan", "Deyle", role = c("aut"), 
                    comment = c(ORCID = "0000-0001-8704-8434")), 
             person("Steve", "Munch", role = c("aut"), 
                    comment = c(ORCID = "0000-0001-7471-5429")), 
             person("Jun", "Cai", role = c("ctb"),
                    comment = c(ORCID = "0000-0001-9495-1226")), 
             person("Jane", "Cowles", role = c("ctb"), 
                    comment = c(ORCID = "0000-0002-6754-9669")), 
             person("Yair", "Daon", role = c("ctb")), 
             person("Andrew", "Edwards", role = c("ctb"), 
                    comment = c(ORCID = "0000-0003-2749-8198")), 
             person("Os", "Keyes", role = c("ctb")), 
             person("James", "Stagge", role = c("ctb"), 
                    comment = c(ORCID = "0000-0002-3667-2904")), 
             person("Masayuki", "Ushio", role = c("ctb"), 
                    comment = c(ORCID = "0000-0003-4831-7181")), 
             person("Ethan", "White", role = c("ctb"), 
                    comment = c(ORCID = "0000-0001-6728-7745")), 
             person("Takeshi", "Abe", role = c("ctb"), 
                    comment = c(ORCID = "0000-0002-7074-4561")), 
             person("George", "Sugihara", role = c("ctb", "ccp", "cre"),
                    email = "sugihara.lab.manager@gmail.com", 
                    comment = c(ORCID = "0000-0002-2863-6946")))            
Description: A new implementation of EDM algorithms based on research software previously developed for internal use in the Sugihara Lab (UCSD/SIO). Contains C++ compiled objects that use time delay embedding to perform state-space reconstruction and nonlinear forecasting and an R interface to those objects using 'Rcpp'. It supports both the simplex projection method from Sugihara & May (1990) <DOI:10.1038/344734a0> and the S-map algorithm in Sugihara (1994) <DOI:10.1098/rsta.1994.0106>. In addition, this package implements convergent cross mapping as described in Sugihara et al. (2012) <DOI:10.1126/science.1227079> and multiview embedding as described in Ye & Sugihara (2016) <DOI:10.1126/science.aag0863>.
License: file LICENSE
URL: https://github.com/SugiharaLab/rEDM
BugReports: https://github.com/SugiharaLab/rEDM/issues
NeedsCompilation: yes
Imports: Rcpp (>= 0.11.5), methods
LinkingTo: Rcpp, RcppEigen
RcppModules: lnlp_module, block_lnlp_module, ccm_module
Suggests: knitr, rmarkdown, R.rsp, ggplot2, testthat, formatR, tibble,
        digest, pkgdown, covr
VignetteBuilder: knitr, R.rsp
RoxygenNote: 6.1.1
LazyData: True
Packaged: 2020-03-05 16:24:06 UTC; eriksaberski
Author: Hao Ye [aut] (<https://orcid.org/0000-0002-8630-1458>),
  Adam Clark [aut] (<https://orcid.org/0000-0002-8843-3278>),
  Ethan Deyle [aut] (<https://orcid.org/0000-0001-8704-8434>),
  Steve Munch [aut] (<https://orcid.org/0000-0001-7471-5429>),
  Jun Cai [ctb] (<https://orcid.org/0000-0001-9495-1226>),
  Jane Cowles [ctb] (<https://orcid.org/0000-0002-6754-9669>),
  Yair Daon [ctb],
  Andrew Edwards [ctb] (<https://orcid.org/0000-0003-2749-8198>),
  Os Keyes [ctb],
  James Stagge [ctb] (<https://orcid.org/0000-0002-3667-2904>),
  Masayuki Ushio [ctb] (<https://orcid.org/0000-0003-4831-7181>),
  Ethan White [ctb] (<https://orcid.org/0000-0001-6728-7745>),
  Takeshi Abe [ctb] (<https://orcid.org/0000-0002-7074-4561>),
  George Sugihara [ctb, ccp, cre]
    (<https://orcid.org/0000-0002-2863-6946>)
Maintainer: George Sugihara <sugihara.lab.manager@gmail.com>
Repository: CRAN
Date/Publication: 2020-03-06 09:20:05 UTC
Built: R 4.0.0; x86_64-w64-mingw32; 2020-04-10 05:54:28 UTC; windows
Archs: i386, x64
