prioritizr-package	prioritizr
%>%	pipe
%T>%	tee
A	OptimizationProblem-methods
A,OptimizationProblem-method	OptimizationProblem-methods
add_absolute_targets	add_absolute_targets
add_absolute_targets,ConservationProblem,character-method	add_absolute_targets
add_absolute_targets,ConservationProblem,matrix-method	add_absolute_targets
add_absolute_targets,ConservationProblem,numeric-method	add_absolute_targets
add_absolute_targets-method	add_absolute_targets
add_binary_decisions	add_binary_decisions
add_boundary_penalties	add_boundary_penalties
add_connected_constraints	prioritizr-deprecated
add_connectivity_penalties	add_connectivity_penalties
add_connectivity_penalties,ConservationProblem,ANY,ANY,array-method	add_connectivity_penalties
add_connectivity_penalties,ConservationProblem,ANY,ANY,data.frame-method	add_connectivity_penalties
add_connectivity_penalties,ConservationProblem,ANY,ANY,dgCMatrix-method	add_connectivity_penalties
add_connectivity_penalties,ConservationProblem,ANY,ANY,Matrix-method	add_connectivity_penalties
add_connectivity_penalties,ConservationProblem,ANY,ANY,matrix-method	add_connectivity_penalties
add_contiguity_constraints	add_contiguity_constraints
add_contiguity_constraints,ConservationProblem,ANY,ANY-method	add_contiguity_constraints
add_contiguity_constraints,ConservationProblem,ANY,data.frame-method	add_contiguity_constraints
add_contiguity_constraints,ConservationProblem,ANY,matrix-method	add_contiguity_constraints
add_corridor_constraints	prioritizr-deprecated
add_cuts_portfolio	add_cuts_portfolio
add_default_decisions	add_default_decisions
add_default_solver	add_default_solver
add_feature_contiguity_constraints	add_feature_contiguity_constraints
add_feature_contiguity_constraints,ConservationProblem,ANY,ANY-method	add_feature_contiguity_constraints
add_feature_contiguity_constraints,ConservationProblem,ANY,data.frame-method	add_feature_contiguity_constraints
add_feature_contiguity_constraints,ConservationProblem,ANY,Matrix-method	add_feature_contiguity_constraints
add_feature_contiguity_constraints,ConservationProblem,ANY,matrix-method	add_feature_contiguity_constraints
add_feature_weights	add_feature_weights
add_feature_weights,ConservationProblem,matrix-method	add_feature_weights
add_feature_weights,ConservationProblem,numeric-method	add_feature_weights
add_gurobi_solver	add_gurobi_solver
add_locked_in_constraints	add_locked_in_constraints
add_locked_in_constraints,ConservationProblem,character-method	add_locked_in_constraints
add_locked_in_constraints,ConservationProblem,logical-method	add_locked_in_constraints
add_locked_in_constraints,ConservationProblem,matrix-method	add_locked_in_constraints
add_locked_in_constraints,ConservationProblem,numeric-method	add_locked_in_constraints
add_locked_in_constraints,ConservationProblem,Raster-method	add_locked_in_constraints
add_locked_in_constraints,ConservationProblem,Spatial-method	add_locked_in_constraints
add_locked_out_constraints	add_locked_out_constraints
add_locked_out_constraints,ConservationProblem,character-method	add_locked_out_constraints
add_locked_out_constraints,ConservationProblem,logical-method	add_locked_out_constraints
add_locked_out_constraints,ConservationProblem,matrix-method	add_locked_out_constraints
add_locked_out_constraints,ConservationProblem,numeric-method	add_locked_out_constraints
add_locked_out_constraints,ConservationProblem,Raster-method	add_locked_out_constraints
add_locked_out_constraints,ConservationProblem,Spatial-method	add_locked_out_constraints
add_loglinear_targets	add_loglinear_targets
add_lpsymphony_solver	add_lsymphony_solver
add_lsymphony_solver	add_lsymphony_solver
add_mandatory_allocation_constraints	add_mandatory_allocation_constraints
add_mandatory_allocation_constraints,ConservationProblem-method	add_mandatory_allocation_constraints
add_manual_bounded_constraints	add_manual_bounded_constraints
add_manual_bounded_constraints,ConservationProblem,data.frame-method	add_manual_bounded_constraints
add_manual_bounded_constraints,ConservationProblem,tbl_df-method	add_manual_bounded_constraints
add_manual_locked_constraints	add_manual_locked_constraints
add_manual_locked_constraints,ConservationProblem,data.frame-method	add_manual_locked_constraints
add_manual_locked_constraints,ConservationProblem,tbl_df-method	add_manual_locked_constraints
add_manual_targets	add_manual_targets
add_manual_targets,ConservationProblem,data.frame-method	add_manual_targets
add_manual_targets,ConservationProblem,tbl_df-method	add_manual_targets
add_manual_targets-method	add_manual_targets
add_max_cover_objective	add_max_cover_objective
add_max_features_objective	add_max_features_objective
add_max_phylo_div_objective	add_max_phylo_div_objective
add_max_phylo_end_objective	add_max_phylo_end_objective
add_max_phylo_objective	add_max_phylo_div_objective
add_max_utility_objective	add_max_utility_objective
add_min_set_objective	add_min_set_objective
add_min_shortfall_objective	add_min_shortfall_objective
add_neighbor_constraints	add_neighbor_constraints
add_neighbor_constraints,ConservationProblem,ANY,ANY,ANY-method	add_neighbor_constraints
add_neighbor_constraints,ConservationProblem,ANY,ANY,array-method	add_neighbor_constraints
add_neighbor_constraints,ConservationProblem,ANY,ANY,data.frame-method	add_neighbor_constraints
add_neighbor_constraints,ConservationProblem,ANY,ANY,matrix-method	add_neighbor_constraints
add_pool_portfolio	add_pool_portfolio
add_proportion_decisions	add_proportion_decisions
add_relative_targets	add_relative_targets
add_relative_targets,ConservationProblem,character-method	add_relative_targets
add_relative_targets,ConservationProblem,matrix-method	add_relative_targets
add_relative_targets,ConservationProblem,numeric-method	add_relative_targets
add_relative_targets-method	add_relative_targets
add_rsymphony_solver	add_rsymphony_solver
add_semicontinuous_decisions	add_semicontinuous_decisions
add_shuffle_portfolio	add_shuffle_portfolio
ArrayParameter	ArrayParameter-class
ArrayParameter-class	ArrayParameter-class
array_parameters	array_parameters
as	as
as.Id	as
as.Id.character	as
as.list,tbl_df-method	tibble-methods
as.list.OptimizationProblem	as.list
as.list.Parameters	as
as.list.Zones	as
binary_matrix_parameter	matrix_parameters
binary_parameter	scalar_parameters
binary_parameter_array	array_parameters
binary_stack	binary_stack
boundary_matrix	boundary_matrix
boundary_matrix.default	boundary_matrix
boundary_matrix.Raster	boundary_matrix
boundary_matrix.SpatialLines	boundary_matrix
boundary_matrix.SpatialPoints	boundary_matrix
boundary_matrix.SpatialPolygons	boundary_matrix
branch_matrix	branch_matrix
branch_matrix.default	branch_matrix
branch_matrix.phylo	branch_matrix
category_layer	category_layer
category_vector	category_vector
category_vector.data.frame	category_vector
category_vector.matrix	category_vector
Collection	Collection-class
Collection-class	Collection-class
col_ids	OptimizationProblem-methods
col_ids,OptimizationProblem-method	OptimizationProblem-methods
compile	compile
compile.ConservationProblem	compile
compressed_formulation	OptimizationProblem-methods
compressed_formulation,OptimizationProblem-method	OptimizationProblem-methods
connected_matrix	connected_matrix
connected_matrix.default	connected_matrix
connected_matrix.Raster	connected_matrix
connected_matrix.SpatialLines	connected_matrix
connected_matrix.SpatialPoints	connected_matrix
connected_matrix.SpatialPolygons	connected_matrix
connectivity_matrix	connectivity_matrix
connectivity_matrix,Raster,Raster-method	connectivity_matrix
connectivity_matrix,Spatial,character-method	connectivity_matrix
connectivity_matrix,Spatial,Raster-method	connectivity_matrix
ConservationModifier	ConservationModifier-class
ConservationModifier-class	ConservationModifier-class
ConservationProblem	ConservationProblem-class
ConservationProblem-class	ConservationProblem-class
Constraint	Constraint-class
Constraint-class	Constraint-class
constraints	constraints
Decision	Decision-class
Decision-class	Decision-class
decisions	decisions
distribute_load	distribute_load
fast_extract	fast_extract
fast_extract,Raster,SpatialLines-method	fast_extract
fast_extract,Raster,SpatialPoints-method	fast_extract
fast_extract,Raster,SpatialPolygons-method	fast_extract
feature_abundances	feature_abundances
feature_abundances.ConservationProblem	feature_abundances
feature_names	feature_names
feature_names,ConservationProblem-method	feature_names
feature_names,ZonesCharacter-method	feature_names
feature_names,ZonesRaster-method	feature_names
feature_representation	feature_representation
feature_representation,ConservationProblem,data.frame-method	feature_representation
feature_representation,ConservationProblem,matrix-method	feature_representation
feature_representation,ConservationProblem,numeric-method	feature_representation
feature_representation,ConservationProblem,Raster-method	feature_representation
feature_representation,ConservationProblem,Spatial-method	feature_representation
get_number_of_threads	parallel
Id	new_id
integer_parameter	scalar_parameters
integer_parameter_array	array_parameters
intersecting_units	intersecting_units
intersecting_units,data.frame,ANY-method	intersecting_units
intersecting_units,Raster,Raster-method	intersecting_units
intersecting_units,Raster,Spatial-method	intersecting_units
intersecting_units,Spatial,Raster-method	intersecting_units
intersecting_units,Spatial,Spatial-method	intersecting_units
irreplaceability	irreplaceability
is	is
is.Id	is
is.parallel	is.parallel
is.Waiver	is
lb	OptimizationProblem-methods
lb,OptimizationProblem-method	OptimizationProblem-methods
loglinear_interpolation	loglinear_interpolation
marxan_boundary_data_to_matrix	marxan_boundary_data_to_matrix
marxan_problem	marxan_problem
marxan_problem.character	marxan_problem
marxan_problem.data.frame	marxan_problem
marxan_problem.default	marxan_problem
matrix_parameters	matrix_parameters
MiscParameter	MiscParameter-class
MiscParameter-class	MiscParameter-class
misc_parameter	misc_parameter
modelsense	OptimizationProblem-methods
modelsense,OptimizationProblem-method	OptimizationProblem-methods
ncell	OptimizationProblem-methods
ncell,OptimizationProblem-method	OptimizationProblem-methods
ncol	OptimizationProblem-methods
ncol,OptimizationProblem-method	OptimizationProblem-methods
ncol,tbl_df-method	tibble-methods
new_id	new_id
new_optimization_problem	new_optimization_problem
new_waiver	new_waiver
nrow	OptimizationProblem-methods
nrow,OptimizationProblem-method	OptimizationProblem-methods
nrow,tbl_df-method	tibble-methods
number_of_features	number_of_features
number_of_features,ConservationProblem-method	number_of_features
number_of_features,OptimizationProblem-method	number_of_features
number_of_features,ZonesCharacter-method	number_of_features
number_of_features,ZonesRaster-method	number_of_features
number_of_planning_units	number_of_planning_units
number_of_planning_units,ConservationProblem-method	number_of_planning_units
number_of_planning_units,OptimizationProblem-method	number_of_planning_units
number_of_total_units	number_of_total_units
number_of_total_units,ConservationProblem-method	number_of_total_units
number_of_zones	number_of_zones
number_of_zones,ConservationProblem-method	number_of_zones
number_of_zones,OptimizationProblem-method	number_of_zones
number_of_zones,ZonesCharacter-method	number_of_zones
number_of_zones,ZonesRaster-method	number_of_zones
numeric_matrix_parameter	matrix_parameters
numeric_parameter	scalar_parameters
numeric_parameter_array	array_parameters
obj	OptimizationProblem-methods
obj,OptimizationProblem-method	OptimizationProblem-methods
Objective	Objective-class
Objective-class	Objective-class
objectives	objectives
OptimizationProblem	OptimizationProblem-class
OptimizationProblem-class	OptimizationProblem-class
OptimizationProblem-methods	OptimizationProblem-methods
parallel	parallel
Parameter	Parameter-class
Parameter-class	Parameter-class
Parameters	Parameters-class
parameters	parameters
Parameters-class	Parameters-class
penalties	penalties
Penalty	Penalty-class
Penalty-class	Penalty-class
pipe	pipe
Portfolio	Portfolio-class
Portfolio-class	Portfolio-class
portfolios	portfolios
pproto	pproto
predefined_optimization_problem	predefined_optimization_problem
presolve_check	presolve_check
presolve_check.ConservationProblem	presolve_check
presolve_check.OptimizationProblem	presolve_check
print	print
print,Id-method	print
print,tbl_df-method	print
print.ArrayParameter	print
print.ConservationModifier	print
print.ConservationProblem	print
print.Id	print
print.OptimizationProblem	print
print.ScalarParameter	print
print.Solver	print
print.Zones	print
prioritizr	prioritizr
prioritizr-deprecated	prioritizr-deprecated
problem	problem
problem,data.frame,character-method	problem
problem,data.frame,data.frame-method	problem
problem,data.frame,ZonesCharacter-method	problem
problem,matrix,data.frame-method	problem
problem,numeric,data.frame-method	problem
problem,Raster,Raster-method	problem
problem,Raster,ZonesRaster-method	problem
problem,Spatial,character-method	problem
problem,Spatial,Raster-method	problem
problem,Spatial,ZonesCharacter-method	problem
problem,Spatial,ZonesRaster-method	problem
proportion_parameter	scalar_parameters
proportion_parameter_array	array_parameters
rarity_weighted_richness	rarity_weighted_richness
rarity_weighted_richness,ConservationProblem,data.frame-method	rarity_weighted_richness
rarity_weighted_richness,ConservationProblem,matrix-method	rarity_weighted_richness
rarity_weighted_richness,ConservationProblem,numeric-method	rarity_weighted_richness
rarity_weighted_richness,ConservationProblem,Raster-method	rarity_weighted_richness
rarity_weighted_richness,ConservationProblem,Spatial-method	rarity_weighted_richness
replacement_cost	replacement_cost
replacement_cost,ConservationProblem,data.frame-method	replacement_cost
replacement_cost,ConservationProblem,matrix-method	replacement_cost
replacement_cost,ConservationProblem,numeric-method	replacement_cost
replacement_cost,ConservationProblem,Raster-method	replacement_cost
replacement_cost,ConservationProblem,Spatial-method	replacement_cost
rhs	OptimizationProblem-methods
rhs,OptimizationProblem-method	OptimizationProblem-methods
rij_matrix	rij_matrix
rij_matrix,Raster,Raster-method	rij_matrix
rij_matrix,Spatial,Raster-method	rij_matrix
row_ids	OptimizationProblem-methods
row_ids,OptimizationProblem-method	OptimizationProblem-methods
run_calculations	run_calculations
ScalarParameter	ScalarParameter-class
ScalarParameter-class	ScalarParameter-class
scalar_parameters	scalar_parameters
sense	OptimizationProblem-methods
sense,OptimizationProblem-method	OptimizationProblem-methods
set_number_of_threads	parallel
show	show
show,ConservationModifier-method	show
show,ConservationProblem-method	show
show,Id-method	show
show,OptimizationProblem-method	show
show,Parameter-method	show
show,Solver-method	show
simulate_cost	simulate_cost
simulate_data	simulate_data
simulate_species	simulate_species
sim_data	sim_data
sim_features	sim_data
sim_features_zones	sim_data
sim_locked_in_raster	sim_data
sim_locked_out_raster	sim_data
sim_phylogeny	sim_data
sim_pu_lines	sim_data
sim_pu_points	sim_data
sim_pu_polygons	sim_data
sim_pu_raster	sim_data
sim_pu_zones_polygons	sim_data
sim_pu_zones_stack	sim_data
solve	solve
solve,ConservationProblem,missing-method	solve
solve,OptimizationProblem,Solver-method	solve
Solver	Solver-class
Solver-class	Solver-class
solvers	solvers
Target	Target-class
Target-class	Target-class
targets	targets
tee	tee
tibble-methods	tibble-methods
ub	OptimizationProblem-methods
ub,OptimizationProblem-method	OptimizationProblem-methods
vtype	OptimizationProblem-methods
vtype,OptimizationProblem-method	OptimizationProblem-methods
Zones	zones
zones	zones
Zones-class	zones
ZonesCharacter	zones
ZonesRaster	zones
zone_names	zone_names
zone_names,ConservationProblem-method	zone_names
zone_names,OptimizationProblem-method	zone_names
zone_names,ZonesCharacter-method	zone_names
zone_names,ZonesRaster-method	zone_names
