gff                     GFF3 file for example genomes
outgroup                Name of outgroup in the phylogenetic tree.
prewas                  Preprocess SNPs before bGWAS
results                 Results from running prewas() on the example
                        data.
snpeff_vcf              Nucleotide variants in example genome samples
                        with snpeff annotations.
tree                    Phylogenetic tree of example genomes
vcf                     Nucleotide variants in example genome samples
