# Create Useful Summaries of the Portal Data

## Documentation for package ‘portalr’ version 0.3.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

abundance | Generate summaries of Portal rodent data
add_seasons | Add Seasons
bait_presence_absence | Ant Bait Presence Absence
biomass | Generate summaries of Portal rodent data
check_default_data_path | Manage the default path for downloading Portal Data into
check_for_newer_data | Check for latest version of data files
clean_plant_data | Do basic cleaning of Portal plant data
clean_rodent_data | Do basic cleaning of Portal rodent data
colony_presence_absence | Ant Colony Presence Absence
download_observations | Download the PortalData repo
energy | Generate summaries of Portal rodent data
fcast_ndvi | Forecast ndvi using a seasonal auto ARIMA
fill_missing_ndvi | Fill in historic ndvi data to the complete timeseries being fit
find_incomplete_censuses | Period code for incomplete censuses
get_dataset_citation | Return Citation for Portal Data
get_data_versions | get version and download info for PortalData
get_default_data_path | Manage the default path for downloading Portal Data into
get_future_moons | Get future moon dates
load_ant_data | Read in the Portal data files
load_datafile | read in a raw datafile from the downloaded data or the GitHub repo
load_plant_data | Read in the Portal data files
load_rodent_data | Read in the Portal data files
load_trapping_data | Read in the Portal data files
ndvi | NDVI by calendar month or lunar month
phenocam | Phenocam data products by day, calendar month, or lunar month
plant_abundance | Generate summaries of Portal plant data
portalr | Creates summaries of the Portal data
shrub_cover | Generate percent cover from Portal plant transect data
summarise_individual_rodents | Return cleaned Portal rodent individual data
summarise_plant_data | Generate summaries of Portal plant data
summarise_rodent_data | Generate summaries of Portal rodent data
summarize_individual_rodents | Return cleaned Portal rodent individual data
summarize_plant_data | Generate summaries of Portal plant data
summarize_rodent_data | Generate summaries of Portal rodent data
use_default_data_path | Manage the default path for downloading Portal Data into
weather | Weather by day, calendar month, or lunar month
yearly | Add Seasons