LDHScpp                 Expectation Maximisation (EM) algorithm
countNumbers            Count genotype combinations at 2 SNPs
daughterSire            targetregion: allocation of paternal half-sib
                        families
editraw                 editraw
genotype.chr            targetregion: progeny genotypes
hapSire                 targetregion: sire haplotypes
hsrecombi               hsrecombi
loglikfun               Calculate log-likelihood function
makehap                 makehap
makehaplist             makehaplist
map.chr                 targetregion: physical map
startvalue              startvalue
targetregion            Description of the targetregion data set
