P_sojae_survey          _Phytophthora sojae_ survey example data
autoplot.hagis.complexities
                        Plot 'hagis' complexities objects
autoplot.hagis.gene.summary
                        Plot 'hagis' summary objects
calculate_complexities
                        Calculate distribution of complexities by
                        sample
calculate_diversities   Calculate diversities indices
diversities_table       Prints table of diversities
hagis                   Tools for analysis of plant pathogen pathotype
                        complexities, distributions and diversity
individual_pathotypes   Prints individual pathotypes for each sample
summarize_gene          Calculate and summarize distribution of
                        susceptibilities by gene
