# 'ggplot2' Based Publication Ready Plots

## Documentation for package ‘ggpubr’ version 0.2.5

- DESCRIPTION file.

## Help Pages

add_summary | Add Summary Statistics onto a ggplot.
annotate_figure | Annotate Arranged Figure
as_ggplot | Storing grid.arrange() arrangeGrob() and plots
axis_scale | Change Axis Scale: log2, log10 and more
background_image | Add Background Image to ggplot2
bgcolor | Change ggplot Panel Background Color
border | Set ggplot Panel Border Line
change_palette | Set Color Palette
clean_theme | Publication ready theme
colnames_style | Draw a Textual Table
color_palette | Set Color Palette
compare_means | Comparison of Means
desc_statby | Descriptive statistics by groups
diff_express | Differential gene expression analysis results
drawDetails.splitText | Draw a Paragraph of Text
facet | Facet a ggplot into Multiple Panels
fill_palette | Set Color Palette
font | Change the Appearance of Titles and Axis Labels
gene_citation | Gene Citation Index
geom_bracket | Add Brackets with Labels to a GGPlot
geom_exec | Execute ggplot2 functions
get_legend | Extract Legends from a ggplot object
get_palette | Generate Color Palettes
ggadd | Add Summary Statistics or a Geom onto a ggplot
ggarrange | Arrange Multiple ggplots
ggballoonplot | Ballon plot
ggbarplot | Bar plot
ggboxplot | Box plot
ggdensity | Density plot
ggdonutchart | Donut chart
ggdotchart | Cleveland's Dot Plots
ggdotplot | Dot plot
ggecdf | Empirical cumulative density function
ggerrorplot | Visualizing Error
ggexport | Export ggplots
gghistogram | Histogram plot
ggline | Line plot
ggmaplot | MA-plot from means and log fold changes
ggpaired | Plot Paired Data
ggpar | Graphical parameters
ggparagraph | Draw a Paragraph of Text
ggpie | Pie chart
ggpubr_args | ggpubr General Arguments Description
ggqqplot | QQ Plots
ggscatter | Scatter plot
ggscatterhist | Scatter Plot with Marginal Histograms
ggstripchart | Stripcharts
ggtext | Text
ggtexttable | Draw a Textual Table
ggviolin | Violin plot
gradient_color | Set Gradient Color
gradient_fill | Set Gradient Color
grids | Add Grids to a ggplot
labs_pubr | Publication ready theme
mean_ci | Add Summary Statistics onto a ggplot.
mean_range | Add Summary Statistics onto a ggplot.
mean_sd | Add Summary Statistics onto a ggplot.
mean_se_ | Add Summary Statistics onto a ggplot.
median_iqr | Add Summary Statistics onto a ggplot.
median_mad | Add Summary Statistics onto a ggplot.
median_range | Add Summary Statistics onto a ggplot.
rotate | Rotate a ggplot Horizontally
rotate_axis_text | Rotate Axes Text
rotate_x_text | Rotate Axes Text
rotate_y_text | Rotate Axes Text
rownames_style | Draw a Textual Table
rremove | Remove a ggplot Component
set_palette | Set Color Palette
show_line_types | Line types available in R
show_point_shapes | Point shapes available in R
stat_bracket | Add Brackets with Labels to a GGPlot
stat_central_tendency | Add Central Tendency Measures to a GGPLot
stat_chull | Plot convex hull of a set of points
stat_compare_means | Add Mean Comparison P-values to a ggplot
stat_conf_ellipse | Plot confidence ellipses.
stat_cor | Add Correlation Coefficients with P-values to a Scatter Plot
stat_mean | Draw group mean points
stat_overlay_normal_density | Overlay Normal Density Plot
stat_pvalue_manual | Add Manually P-values to a ggplot
stat_regline_equation | Add Regression Line Equation and R-Square to a GGPLOT.
stat_stars | Add Stars to a Scatter Plot
table_cell_bg | Draw a Textual Table
table_cell_font | Draw a Textual Table
tbody_style | Draw a Textual Table
text_grob | Create a Text Graphical object
theme_classic2 | Publication ready theme
theme_cleveland | Cleveland's Dot Plots
theme_pubclean | Publication ready theme
theme_pubr | Publication ready theme
theme_transparent | Create a ggplot with Transparent Background
ttheme | Draw a Textual Table
xscale | Change Axis Scale: log2, log10 and more
yscale | Change Axis Scale: log2, log10 and more