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| apply.label.to.morphdata | Load a label from file and apply it to morphometry data. |
| apply.labeldata.to.morphdata | Apply a label to morphometry data. |
| arrange.brainview.images | Combine several brainview images into a new figure. |
| clip.data | Clip data at quantiles to remove outliers. |
| coloredmesh.from.mask | Create a coloredmesh from a mask. |
| coloredmesh.plot.colorbar.separate | Draw colorbar for coloredmeshes in separate 2D plot. |
| combine.colorbar.with.brainview.animation | Combine a colorbar and a brain animation in gif format into a new animation. |
| combine.colorbar.with.brainview.image | Combine a colorbar and a brainview image into a new figure. |
| delete_all_optional_data | Delete all data in the package cache. |
| download_fsaverage | Download the FreeSurfer v6 fsaverage subject. |
| download_optional_data | Download optional data for this package if required. |
| find.subjectsdir.of | Find the subject directory containing the fsaverage subject (or others) on disk. |
| fup | Transform first character of a string to uppercase. |
| get.atlas.region.names | Determine atlas region names from a subject. |
| get.view.angle.names | Get list of valid view angle names. |
| get_optional_data_filepath | Access a single file from the package cache by its file name. |
| group.agg.atlas.native | Aggregate native space morphometry data over brain atlas regions and subjects for a group of subjects. |
| group.agg.atlas.standard | Aggregate standard space morphometry data over brain atlas regions and subjects for a group of subjects. |
| group.annot | Load annotations for a group of subjects. |
| group.concat.measures.native | Concatenate native space data for a group of subjects. |
| group.concat.measures.standard | Concatenate standard space data for a group of subjects. |
| group.label | Retrieve label data for a group of subjects. |
| group.label.from.annot | Extract a region from an atlas annotation as a label for a group of subjects. |
| group.morph.agg.native | Aggregate native space morphometry data over one hemisphere for a group of subjects. |
| group.morph.agg.standard | Aggregate standard space (fsaverage) morphometry data over one hemisphere for a group of subjects. |
| group.morph.native | Retrieve native space morphometry data for a group of subjects. |
| group.morph.standard | Retrieve standard space morphometry data for a group of subjects. |
| group.multimorph.agg.native | Aggregate native space morphometry data for multiple measures over hemispheres for a group of subjects. |
| group.multimorph.agg.standard | Aggregate standard space (fsaverage) morphometry data for multiple measures over hemispheres for a group of subjects. |
| label.from.annotdata | Extract a region from an annotation as a label. |
| labeldata.from.mask | Create labeldata from a mask. |
| list_optional_data | Get file names available in package cache. |
| mask.from.labeldata.for.hemi | Create a binary mask from labels. |
| mesh.vertex.neighbors | Compute neighbors of a vertex |
| read.md.demographics | Read demographics file |
| read.md.subjects | Read subjects file |
| regions.to.ignore | Give suggestions for regions to ignore for an atlas. |
| report.on.demographics | Print a demographics report |
| spread.values.over.annot | Spread a single value for a region to all region vertices. |
| spread.values.over.hemi | Spread the values in the region_value_list and return them for one hemisphere. |
| spread.values.over.subject | Spread the values in the region_value_list and return them for one hemisphere. |
| subject.annot | Load an annotation for a subject. |
| subject.atlas.agg | Aggregate morphometry data over brain atlas regions for a subject. |
| subject.filepath.morph.native | Construct filepath of native space morphometry data file. |
| subject.filepath.morph.standard | Construct filepath of standard space morphometry data file. |
| subject.label | Retrieve label data for a single subject. |
| subject.label.from.annot | Extract a region from an atlas annotation as a label for a subject. |
| subject.morph.native | Retrieve native space morphometry data for a single subject. |
| subject.morph.standard | Retrieve standard space morphometry data for a single subject. |
| subject.surface | Load a surface for a subject. |
| vis.data.on.fsaverage | Visualize arbitrary data on the fsaverage template subject, if available. |
| vis.data.on.subject | Visualize arbitrary data on the surface of any subject. |
| vis.labeldata.on.subject | Visualize a label on the surface of a subject. |
| vis.mask.on.subject | Visualize a vertex mask on the surface of a subject. |
| vis.region.values.on.subject | Visualize arbitrary data, one value per atlas region, on the surface of any subject (including template subjects). |
| vis.subject.annot | Visualize an annotation for a subject. |
| vis.subject.label | Visualize a label for a subject. |
| vis.subject.morph.native | Visualize native space morphometry data for a subject. |
| vis.subject.morph.standard | Visualize native space morphometry data for a subject. |
| vislayout.from.coloredmeshes | Visualize coloredmeshes from several angles and combine the images into a new figure. |
| write.region.aggregated | Write data aggregated over regions to morphometry file for group. |
| write.region.values | Write one value per atlas region for a subject. |
| write.region.values.fsaverage | Write one value per atlas region for a template subject. |