# Continuous-Time Movement Modeling

## Documentation for package ‘ctmm’ version 0.5.9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

ctmm-package | Continuous-time movement modeling
%#% | Convert dimensionful quantities to and from SI units
akde | Calculate an autocorrelated kernel density estimate
akde.list | Calculate an autocorrelated kernel density estimate
akde.telemetry | Calculate an autocorrelated kernel density estimate
annotate | Color telemetry objects by time
as.telemetry | Import, coerce, and summarize MoveBank data
as.telemetry.character | Import, coerce, and summarize MoveBank data
as.telemetry.data.frame | Import, coerce, and summarize MoveBank data
as.telemetry.Move | Import, coerce, and summarize MoveBank data
bandwidth | Calculate the optimal bandwidth matrix of movement data
buffalo | African buffalo GPS dataset from Kruger National Park, South Africa.
cleave | Spatial selection methods for telemetry objects.
coati | Coatis on Barro Colorado Island, Panama.
color | Color telemetry objects by time
correlogram | Calculate model fit residuals and assess their autocorrelation
ctmm | Specify, fit, and select continuous-time movement models
ctmm-FAQ | ctmm FAQ
ctmm-faq | ctmm FAQ
ctmm.boot | Parametric bootstrap continuous-time movement models
ctmm.fit | Specify, fit, and select continuous-time movement models
ctmm.guess | Visually fit a movement model to a variogram
ctmm.loglike | Specify, fit, and select continuous-time movement models
ctmm.select | Specify, fit, and select continuous-time movement models
emulate | Draw a random model-fit from the sampling distribution
emulate.ctmm | Draw a random model-fit from the sampling distribution
emulate.telemetry | Draw a random model-fit from the sampling distribution
encounter | Calculate the conditional location distribution of ecounters
export | Export ctmm data formats
extent-method | Extent
gazelle | Mongolian gazelle GPS dataset from the Mongolia's Eastern Steppe.
head | Import, coerce, and summarize MoveBank data
head.telemetry | Import, coerce, and summarize MoveBank data
homerange | Calculate a range distribution estimate
jaguar | Jaguar data from the Jaguar movement database.
lasso | Spatial selection methods for telemetry objects.
mag | Calculate model fit residuals and assess their autocorrelation
mag.telemetry | Calculate model fit residuals and assess their autocorrelation
marquee | Spatial selection methods for telemetry objects.
mean.UD | Average autocorrelated kernel density estimates
mean.variogram | Compute a number-weighted average of variogram objects
median | Projection
median.telemetry | Projection
occurrence | Calculate a Kriged occurrence distribution estimate
optimizer | Minimize a function
outlie | Methods to facilitate outlier detection.
outlier | Methods to facilitate outlier detection.
overlap | Calculate the overlap between two stationary distributions
pelican | Brown Pelican GPS and ARGOS data.
periodogram | Calculate the Lomb-Scargle periodogram of animal-tracking data
plot | Plotting methods for telemetry objects.
plot.outlie | Methods to facilitate outlier detection.
plot.periodogram | Calculate the Lomb-Scargle periodogram of animal-tracking data
plot.telemetry | Plotting methods for telemetry objects.
plot.variogram | Plotting methods for variogram objects.
predict | Predict or simulate from a continuous-time movement model
predict.ctmm | Predict or simulate from a continuous-time movement model
predict.telemetry | Predict or simulate from a continuous-time movement model
projection-method | Projection
projection<--method | Projection
raster-method | Export ctmm data formats
residuals.ctmm | Calculate model fit residuals and assess their autocorrelation
residuals.telemetry | Calculate model fit residuals and assess their autocorrelation
simulate | Predict or simulate from a continuous-time movement model
simulate.ctmm | Predict or simulate from a continuous-time movement model
simulate.telemetry | Predict or simulate from a continuous-time movement model
SpatialPoints.telemetry | Export ctmm data formats
SpatialPointsDataFrame.telemetry | Export ctmm data formats
SpatialPolygonsDataFrame.telemetry | Export ctmm data formats
SpatialPolygonsDataFrame.UD | Export ctmm data formats
speed | Estimate the average speed of a tracked animal
speed.ctmm | Estimate the average speed of a tracked animal
speed.telemetry | Estimate the average speed of a tracked animal
speeds | Estimate the average speed of a tracked animal
speeds.ctmm | Estimate the average speed of a tracked animal
speeds.telemetry | Estimate the average speed of a tracked animal
summary.ctmm | Summarize a continuous-time movement model
summary.telemetry | Import, coerce, and summarize MoveBank data
summary.UD | Summarize a range distribution
summary.UERE | Estimate RMS UERE from calibration data
tail | Import, coerce, and summarize MoveBank data
tail.telemetry | Import, coerce, and summarize MoveBank data
turtle | Wood turtle GPS and calibration dataset from Working Land and Seascapes.
uere | Estimate RMS UERE from calibration data
uere.fit | Estimate RMS UERE from calibration data
uere<- | Estimate RMS UERE from calibration data
variogram | Calculate an empirical variogram from movement data
variogram.fit | Visually fit a movement model to a variogram
wolf | Maned wolf GPS dataset from The Maned Wolf Conservation Program.
writeRaster-method | Export ctmm data formats
writeShapefile | Export ctmm data formats
writeShapefile.telemetry | Export ctmm data formats
writeShapefile.UD | Export ctmm data formats
zoom-method | Plotting methods for telemetry objects.
zoom-method | Plotting methods for variogram objects.