# BiCluster Algorithms

## Documentation for package ‘biclust’ version 2.0.2

- DESCRIPTION file.
- Package NEWS.

## Help Pages

additiveVariance | Coherence measures
BCBimax | The Bimax Bicluster algorithm
BCBimax-class | The Bimax Bicluster algorithm
BCCC | The CC Bicluster algorithm
BCCC-class | The CC Bicluster algorithm
BCPlaid | The Plaid Model Bicluster algorithm
BCPlaid-class | The Plaid Model Bicluster algorithm
BCQuest | The Questmotif Bicluster algorithm
BCQuest-class | The Questmotif Bicluster algorithm
BCQuestmet | The Questmotif Bicluster algorithm
BCQuestmet-class | The Questmotif Bicluster algorithm
BCQuestord | The Questmotif Bicluster algorithm
BCQuestord-class | The Questmotif Bicluster algorithm
BCrepBimax | The Bimax Bicluster algorithm
BCrepBimax-class | The Bimax Bicluster algorithm
BCSpectral | The Spectral Bicluster algorithm
BCSpectral-class | The Spectral Bicluster algorithm
BCXmotifs | The Xmotifs Bicluster algorithm
BCXmotifs-class | The Xmotifs Bicluster algorithm
BicatYeast | BicAT Yeast
Biclust | The Biclust Class
biclust | The biclust Method
Biclust-class | The Biclust Class
biclust-method | The Bimax Bicluster algorithm
biclust-method | The CC Bicluster algorithm
biclust-method | The Plaid Model Bicluster algorithm
biclust-method | The Questmotif Bicluster algorithm
biclust-method | The Spectral Bicluster algorithm
biclust-method | The Xmotifs Bicluster algorithm
biclust-method | The biclust Method
biclustbarchart | Bicluster Barchart
bicluster | Extract Bilcuster
biclusternumber | Extract Bilcuster
biclustmember | Bicluster Membership Graph
BiclustMethod | The BiclustMethod Virtual Class
BiclustMethod-class | The BiclustMethod Virtual Class
BiclustResult | The Biclust Class
bicorder | Bicluster Membership Graph
Bimax | The Bimax Bicluster algorithm
bimax.grid | Parameter Grid for BCBimax Biclustering
binarize | Binarize
binarizeByPercentage | Binarize
bubble plot | Bubbleplot
bubbleplot | Bubbleplot
CC | The CC Bicluster algorithm
ChiaKaruturi | Chia and Karuturi Function
clustmember | Bicluster Membership Graph
coherence | Coherence measures
computeObservedFstat | Diagnostic F Statistic Calculation
constantVariance | Coherence measures
densityOnes | Binarize
diagnoseColRow | Bootstrap Procedure for Bicluster Diagnostics
diagnosticPlot | Diagnostic F Statistics Visualization
diagnosticPlot2 | Diagnostics F Statistiics Visualization
diagnosticTest | Testing Procedure for Bicluster Diagnostics
discretize | Create a discret matrix
drawHeatmap | Draw Heatmap
drawHeatmap2 | Draw Heatmap
E. coli microarray synthetic data matrix | SynTReN E. coli
EisenYeast | Eisen Yeast
ensemble | Ensemble Methods for Bicluster Algorithms
Escherichia Coly data matrix generated by SynTReN | SynTReN E. coli
heatmap | Draw Heatmap
heatmapBC | Overlapping Heatmap
isoverlapp | Is Bicresult overlapping?
jaccard2 | Jaccardind
jaccardind | Jaccardind
Kluger biclustering | The Spectral Bicluster algorithm
multiplicativeVariance | Coherence measures
parallel coordinates | Parallel Coordinates
parallelCoordinates | Parallel Coordinates
plaid | The Plaid Model Bicluster algorithm
plaid model | The Plaid Model Bicluster algorithm
plaid.grid | Parameter Grid for BCPlaid Biclustering
plotclust | Barplot of Bicluster
predictBimax | Predict from a BCrepBimax Result
Quest | The Questmotif Bicluster algorithm
repBimax | The Bimax Bicluster algorithm
Saccharomices Cerevisiae data matrix | Eisen Yeast
Saccharomices Cerevisiae reduced data matrix | BicAT Yeast
show-method | The Biclust Class
signVariance | Coherence measures
spectral | The Spectral Bicluster algorithm
spectral biclustering | The Spectral Bicluster algorithm
star graph | Bubbleplot
summary-method | The Biclust Class
SyntrenEcoli | SynTReN E. coli
turner biclustering | The Plaid Model Bicluster algorithm
writeBiclusterResults | writeBiclusterResults
writeBiclusters | writeBiclusterResults
writeclust | Write a Bicluster as a Cluster Result
Xmotif | The Xmotifs Bicluster algorithm
yeast microarray data matrix | Eisen Yeast
yeast microarray reduced data matrix | BicAT Yeast