bcRep-package	bcRep-package
aaDistribution	aaDistribution
aaseqtab	aaseqtab
aaseqtab2	aaseqtab2
bcRep	bcRep-package
clones	clones
clones.allind	clones.allind
clones.CDR3Length	clones.CDR3Length
clones.filterFunctionality	clones.filterFunctionality
clones.filterJunctionFrame	clones.filterJunctionFrame
clones.filterSize	clones.filterSize
clones.giniIndex	clones.giniIndex
clones.IDlist	clones.IDlist
clones.ind	clones.ind
clones.shared	clones.shared
clones.shared.summary	clones.shared
combineIMGT	combineIMGT
compare.aaDistribution	compare.aaDistribution
compare.geneUsage	compare.geneUsage
compare.trueDiversity	compare.trueDiversity
dist.PCoA	dist.PCoA
geneUsage	geneUsage
geneUsage.distance	geneUsage.distance
mutationtab	mutationtab
ntseqtab	ntseqtab
plotAADistribution	aaDistribution
plotClonesCDR3Length	clones.CDR3Length
plotClonesCopyNumber	plotClonesCopyNumber
plotCompareAADistribution	compare.aaDistribution
plotCompareGeneUsage	compare.geneUsage
plotCompareTrueDiversity	compare.trueDiversity
plotDistPCoA	dist.PCoA
plotGeneComb	sequences.geneComb
plotGeneUsage	geneUsage
plotSequencesMutationAA	sequences.mutation.AA
plotSequencesMutationBase	sequences.mutation.base
plotTrueDiversity	trueDiversity
readIMGT	readIMGT
sequences.distance	sequences.distance
sequences.functionality	sequences.functionality
sequences.geneComb	sequences.geneComb
sequences.getAnyFunctionality	sequences.getAnyFunctionality
sequences.getAnyJunctionFrame	sequences.getAnyJunctionFrame
sequences.getInFrames	sequences.getAnyJunctionFrame
sequences.getOutOfFrames	sequences.getAnyJunctionFrame
sequences.getProductives	sequences.getAnyFunctionality
sequences.getUnproductives	sequences.getAnyFunctionality
sequences.junctionFrame	sequences.junctionFrame
sequences.mutation	sequences.mutation
sequences.mutation.AA	sequences.mutation.AA
sequences.mutation.base	sequences.mutation.base
summarytab	summarytab
trueDiversity	trueDiversity
vgenes	vgenes
