Bayesian Methods and Graphical Model Structures for Statistical Modeling


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Documentation for package ‘bbricks’ version 0.1.1

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B C D F G H I L M P R S misc

-- B --

BasicBayesian Create objects of type '"BasicBayesian"'.

-- C --

cancerData Cancer mortality of 20 cities
CatDirichlet Create objects of type "CatDirichlet".
CatDP Create objects of type "CatDP".
CatHDP Create objects of type "CatHDP".
CatHDP2 Create objects of type "CatHDP2".

-- D --

dCategorical Probability mass function for Categorical distribution
dDir Density function for Dirichelt distribution
dGaussian Density function of Gaussian distribution
DP Create objects of type "DP".
dPosteriorPredictive Get the density value of the posterior predictive distribution
dPosteriorPredictive.CatDirichlet Posterior predictive density function of a "CatDirichlet" object
dPosteriorPredictive.CatDP Posterior predictive density function of a "CatDP" object
dPosteriorPredictive.CatHDP Posterior predictive density function of a "CatHDP" object
dPosteriorPredictive.CatHDP2 Posterior predictive density function of a "CatHDP" object
dPosteriorPredictive.DP Posterior predictive density function of a Dirichlet Process object
dPosteriorPredictive.GaussianNIG Posterior predictive density function of a "GaussianNIG" object
dPosteriorPredictive.GaussianNIW Posterior predictive density function of a "GaussianNIW" object
dPosteriorPredictive.HDP Posterior predictive density function of a "HDP" object
dPosteriorPredictive.HDP2 Posterior predictive density function of a "HDP2" object
dT Density function for (multivariate) t distribution

-- F --

farmadsData farm ads data

-- G --

GaussianNIG Create objects of type "GaussianNIG".
GaussianNIW Create objects of type "GaussianNIW".

-- H --

HDP Create objects of type "HDP".
HDP2 Create objects of type "HDP2".

-- I --

inferenceJointGaussian Inference in joint Gaussian distribution

-- L --

linearGaussian Linear Gaussian systems
logsumexp log sum exp
lrData Samples from a simple linear model

-- M --

MAP Get the Maximum A Posteriori(MAP) estimate of a "BayesianBrick" object
MAP.CatDirichlet MAP estimate of a "CatDirichlet" object
MAP.CatDP Maximum A Posteriori(MAP) estimate of a "CatDP" object
MAP.GaussianNIG MAP estimate of a "GaussianNIG" object
MAP.GaussianNIW Maximum A Posteriori(MAP) estimate of a "GaussianNIW" object
marginalLikelihood Get the marginal likelihood of a "BayesianBrick" object
marginalLikelihood.CatDirichlet Marginal likelihood of a "CatDirichlet" object
marginalLikelihood.CatDP Marginal likelihood of a "CatDP" object
marginalLikelihood.DP Marginallikelihood for Dirichlet Process(DP)
marginalLikelihood.GaussianNIG Marginal likelihood of a "GaussianNIG" object
marginalLikelihood.GaussianNIW Marginal likelihood of a "GaussianNIW" object
marginalLikelihood.HDP Marginallikelihood for HDP
marginalLikelihood.HDP2 Marginallikelihood for HDP2
marginalLikelihood_bySufficientStatistics Get the marginal likelihood of a "BayesianBrick" object
marginalLikelihood_bySufficientStatistics.CatDirichlet Marginal likelihood of a "CatDirichlet" object, usnig sufficient statistics
marginalLikelihood_bySufficientStatistics.CatDP Marginal likelihood of a "CatDP" object, usnig sufficient statistics
marginalLikelihood_bySufficientStatistics.GaussianNIG Marginal likelihood of a "GaussianNIG" object, usnig sufficient statistics
marginalLikelihood_bySufficientStatistics.GaussianNIW Marginal likelihood of a "GaussianNIW" object, usnig sufficient statistics
MetropolisHastings Metropolis-Hastings sampler
mmData Samples from a mixture model
mmhData Samples from a hierarchical mixture model
mmhhData Samples from a hierarchical mixture model with two layers of hierarchies
MPE Get the Mean Posterior Estimate(MPE) of a "BayesianBrick" object
MPE.CatDirichlet MPE of a "CatDirichlet" object
MPE.CatDP Mean Posterior Estimate(MPE) of a "CatDP" object
MPE.GaussianNIG MPE estimate of a "GaussianNIG" object
MPE.GaussianNIW Mean Posterior Estimate(MPE) of a "GaussianNIW" object

-- P --

pdsInverse Inverse of a positive definite symmetric matrix
posterior update the prior distribution with sufficient statistics
posterior.CatDirichlet Update a "CatDirichlet" object with sample sufficient statistics
posterior.CatDP Update a "CatDP" object with sample sufficient statistics
posterior.CatHDP Update a "CatHDP" object with sample sufficient statistics
posterior.CatHDP2 Update a "CatHDP2" object with sample sufficient statistics
posterior.DP Update a "DP" object with sample sufficient statistics
posterior.GaussianNIG Update a "GaussianNIG" object with sample sufficient statistics
posterior.GaussianNIW Update a "GaussianNIW" object with sample sufficient statistics
posterior.HDP Update a "HDP" object with sample sufficient statistics
posterior.HDP2 Update a "HDP2" object with sample sufficient statistics
posteriorDiscard update the prior distribution with sufficient statistics
posteriorDiscard.CatDirichlet Update a "CatDirichlet" object with sample sufficient statistics
posteriorDiscard.CatDP Update a "CatDP" object with sample sufficient statistics
posteriorDiscard.CatHDP Update a "CatHDP" object with sample sufficient statistics
posteriorDiscard.CatHDP2 Update a "CatHDP2" object with sample sufficient statistics
posteriorDiscard.DP Update a "DP" object with sample sufficient statistics
posteriorDiscard.GaussianNIG Update a "GaussianNIG" object with sample sufficient statistics
posteriorDiscard.GaussianNIW Update a "GaussianNIW" object with sample sufficient statistics
posteriorDiscard.HDP Update a "HDP" object with sample sufficient statistics
posteriorDiscard.HDP2 Update a "HDP2" object with sample sufficient statistics
posteriorDiscard_bySufficientStatistics update the prior distribution with sufficient statistics
posteriorDiscard_bySufficientStatistics.CatDirichlet Update the prior Dirichlet distribution with sample sufficient statistics
posteriorDiscard_bySufficientStatistics.CatDP Update a "CatDP" object with sample sufficient statistics
posterior_bySufficientStatistics update the prior distribution with sufficient statistics
posterior_bySufficientStatistics.CatDirichlet Update a "CatDirichlet" object with sample sufficient statistics
posterior_bySufficientStatistics.CatDP Update a "CatDP" object with sample sufficient statistics
print.BasicBayesian Print the content of an BasicBasyesian object
print.CatHDP Print the content of an CatHDP object
print.CatHDP2 Print the content of an CatHDP2 object
print.DP print the content of a "DP" object
print.HDP print the content of a "HDP" object
print.HDP2 print the content of a "HDP2" object

-- R --

rCategorical Random generation for Categorical distribution
rDir Random generation for Dirichelt distribution
release_questions additional release questions
rGaussian Random generation for Gaussian distribution
rPosteriorPredictive Generate random samples from the posterior predictive distribution
rPosteriorPredictive.CatDirichlet Posterior predictive random generation of a "CatDirichlet" object
rPosteriorPredictive.CatDP Posterior predictive random generation of a "CatDP" object
rPosteriorPredictive.CatHDP Posterior predictive random generation of a "CatHDP" object
rPosteriorPredictive.CatHDP2 Posterior predictive random generation of a "CatHDP2" object
rPosteriorPredictive.DP Posterior predictive random generation of a "DP" object
rPosteriorPredictive.GaussianNIG Posterior predictive random generation of a "GaussianNIG" object
rPosteriorPredictive.GaussianNIW Posterior predictive random generation of a "GaussianNIW" object
rPosteriorPredictive.HDP Posterior predictive random generation of a "HDP" object
rPosteriorPredictive.HDP2 Posterior predictive random generation of a "HDP2" object
rT Random Generation for (multivariate) t distribution

-- S --

sufficientStatistics Get sample sufficient statistics
sufficientStatistics.CatDirichlet Sufficient statistics of a "CatDirichlet" object
sufficientStatistics.CatDP Sufficient statistics of a "CatDP" object
sufficientStatistics.DP Sufficient statistics of a "DP" object
sufficientStatistics.GaussianNIG Sufficient statistics of a "GaussianNIG" object
sufficientStatistics.GaussianNIW Sufficient statistics of a "GaussianNIW" object
sufficientStatistics.HDP Sufficient statistics of a "HDP" object
sufficientStatistics.HDP2 Sufficient statistics of a "HDP2" object
sufficientStatistics_Weighted Get weighted sample sufficient statistics
sufficientStatistics_Weighted.CatDirichlet Weighted sufficient statistics of a "CatDirichlet" object
sufficientStatistics_Weighted.CatDP Weighted sufficient statistics of a "CatDP" object
sufficientStatistics_Weighted.DP Weighted sufficient statistics of a "DP" object
sufficientStatistics_Weighted.GaussianNIG Weighted sufficient statistics of a "GaussianNIG" object
sufficientStatistics_Weighted.GaussianNIW Weighted sufficient statistics for a "GaussianNIW" object
sufficientStatistics_Weighted.HDP Weighted sufficient statistics of a "HDP" object
sufficientStatistics_Weighted.HDP2 Weighted sufficient statistics of a "HDP2" object

-- misc --

%plus% a plus b with NA values
.is a internal version of "is", only for this package