# Generated by roxygen2: do not edit by hand

S3method("!",Splits)
S3method("+",Splits)
S3method("-",Splits)
S3method("[[",Splits)
S3method(NSplits,Splits)
S3method(NSplits,list)
S3method(NSplits,multiPhylo)
S3method(NSplits,numeric)
S3method(NSplits,phylo)
S3method(NTip,Splits)
S3method(NTip,list)
S3method(NTip,multiPhylo)
S3method(NTip,phylo)
S3method(RenumberTips,list)
S3method(RenumberTips,multiPhylo)
S3method(RenumberTips,phylo)
S3method(TipLabels,Splits)
S3method(TipLabels,TreeNumber)
S3method(TipLabels,character)
S3method(TipLabels,default)
S3method(TipLabels,list)
S3method(TipLabels,matrix)
S3method(TipLabels,multiPhylo)
S3method(TipLabels,numeric)
S3method(TipLabels,phyDat)
S3method(TipLabels,phylo)
S3method(as.Newick,list)
S3method(as.Newick,multiPhylo)
S3method(as.Newick,phylo)
S3method(as.Splits,Splits)
S3method(as.Splits,list)
S3method(as.Splits,logical)
S3method(as.Splits,multiPhylo)
S3method(as.Splits,phylo)
S3method(as.TreeNumber,character)
S3method(as.TreeNumber,multiPhylo)
S3method(as.TreeNumber,phylo)
S3method(as.character,Splits)
S3method(as.logical,Splits)
S3method(as.phylo,TreeNumber)
S3method(as.phylo,numeric)
S3method(c,Splits)
S3method(duplicated,Splits)
S3method(length,Splits)
S3method(names,Splits)
S3method(print,Splits)
S3method(print,TreeNumber)
S3method(summary,Splits)
S3method(unique,Splits)
export(.CompatibleRaws)
export(.CompatibleSplit)
export(.DecodeBinary)
export(.DecodeLastRaw)
export(.DecodeRaw)
export(.UnrootedKeys)
export(AddTip)
export(AddTipEverywhere)
export(AllAncestors)
export(AllDescendantEdges)
export(AncestorEdge)
export(ApePostorder)
export(ApeTime)
export(BalancedTree)
export(CharacterInformation)
export(CladeSizes)
export(Cladewise)
export(CollapseEdge)
export(CollapseNode)
export(CompatibleSplits)
export(ConsensusWithout)
export(DescendantEdges)
export(DoubleFactorial)
export(EdgeAncestry)
export(EdgeDistances)
export(EnforceOutgroup)
export(ExtractTaxa)
export(ForestSplits)
export(IC1Spr)
export(LnDoubleFactorial)
export(LnDoubleFactorial.int)
export(LnRooted)
export(LnRooted.int)
export(LnTreesMatchingSplit)
export(LnUnrooted)
export(LnUnrooted.int)
export(LnUnrootedMult)
export(LnUnrootedSplits)
export(LogDoubleFactorial)
export(LogDoubleFactorial.int)
export(MRCA)
export(MarkMissing)
export(MatrixToPhyDat)
export(MultiSplitInformation)
export(N1Spr)
export(NJTree)
export(NPartitionPairs)
export(NPartitions)
export(NRooted)
export(NRootedShapes)
export(NSplits)
export(NTip)
export(NUnrooted)
export(NUnrootedMult)
export(NUnrootedShapes)
export(NUnrootedSplits)
export(NewickTree)
export(NeworderPhylo)
export(NeworderPruningwise)
export(NexusTokens)
export(NonDuplicateRoot)
export(PectinateTree)
export(PhyDat)
export(PhyDatToMatrix)
export(PhyDatToString)
export(PhyToString)
export(PhydatToString)
export(Postorder)
export(PostorderEdges)
export(Preorder)
export(Pruningwise)
export(RandomTree)
export(ReadAsPhyDat)
export(ReadCharacters)
export(ReadTntAsPhyDat)
export(ReadTntCharacters)
export(ReadTntTree)
export(Renumber)
export(RenumberEdges)
export(RenumberTips)
export(RenumberTree)
export(RightmostCharacter)
export(RootOnNode)
export(RootTree)
export(RootedTreeShape)
export(RootedTreeWithShape)
export(SampleOne)
export(SingleTaxonTree)
export(SortTree)
export(SplitFrequency)
export(SplitInformation)
export(SplitMatchProbability)
export(SplitNumber)
export(StringToPhyDat)
export(Subsplit)
export(Subtree)
export(SupportColor)
export(SupportColour)
export(TNTText2Tree)
export(TipLabels)
export(TipsInSplits)
export(TreeIsRooted)
export(TreeSplits)
export(TreesMatchingSplit)
export(TrivialSplits)
export(UnrootedKeys)
export(UnrootedTreeKey)
export(UnrootedTreeShape)
export(UnrootedTreeWithKey)
export(UnrootedTreeWithShape)
export(UnrootedTreesMatchingSplit)
export(UnshiftTree)
export(WithoutTrivialSplits)
export(as.Newick)
export(as.Splits)
export(as.TreeNumber)
export(doubleFactorials)
export(in.Splits)
export(logDoubleFactorials)
export(match.Splits)
exportClasses(Splits)
exportClasses(TreeNumber)
importFrom(R.cache,addMemoization)
importFrom(ape,as.phylo)
importFrom(ape,bind.tree)
importFrom(ape,collapse.singles)
importFrom(ape,consensus)
importFrom(ape,drop.tip)
importFrom(ape,is.rooted)
importFrom(ape,nj)
importFrom(ape,read.tree)
importFrom(ape,reorder.phylo)
importFrom(ape,root)
importFrom(ape,rtree)
importFrom(ape,unroot)
importFrom(ape,write.tree)
importFrom(colorspace,diverge_hcl)
importFrom(graphics,legend)
importFrom(phangorn,Ancestors)
importFrom(phangorn,Descendants)
importFrom(phangorn,allDescendants)
importFrom(phangorn,dist.hamming)
importFrom(phangorn,phyDat)
useDynLib(TreeTools, .registration = TRUE)
