# Rao-Scott Cochran-Armitage by Slices Trend Test

## Documentation for package ‘RSCABS’ version 0.9.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

RSCABS-package | Runs the Rao-Scott adjusted Cochran-Armitage trend test by slices (RSCABS) analysis
addHistoSpec | Specify data parameters
checkPlot | Check the selection for plotting
checkSelction | Checks user inputs
convert2Score | Converts any object that is not zero or a positive number to NA
detailedResults2HTML | Saves results as an HTML file
detailedResults2Output | Print results to the GUI window
exampleHistData | Example histology data
filterData | Filters problematic data
getDir | Attain the name of a directory
Histopath | GUI for analysis of histopathological data
openCB | Open a csv file
otherPath | Other analyses for histopathological endpoints
plotPath | Plot histopathological data
plotRSCABS | Plots histopathological data.
popMessage | Pops up a message
prepDataRSCABS | Prepares data for an RSCABS analysis
RSCABK | Runs the kth slice of RSCABS
RSCABS | Runs the Rao-Scott adjusted Cochran-Armitage trend test by slices (RSCABS) analysis
RSCABSMain | Cleans data and runs RSCABS when called from the GUI interface
runDetailedResults | Attain detailed results on an endpoint
runEffectSelect | Runs a detailed analysis on an endpoint
runRSCABS | Runs RSCABS
runStdSubset | Subset the data used in Histopath
saveCB | Attain the name of a file to be saved
saveFile | Saves a data set
selectPara | Window to declare the names of variables and values
setPlotParms | Sets the default plotting parameters for RSCABS
stepDownRSCABS | Performs the step down aspect of RSCABS
stepKRSCABS | Steps through the severity score for a given effect
subsetDataKeep | Subsets data