Package: PLNmodels
Title: Poisson Lognormal Models
Version: 0.9.5
Authors@R: c(
  person("Julien", "Chiquet", role = c("aut", "cre"), email = "julien.chiquet@inrae.fr",
      comment = c(ORCID = "0000-0002-3629-3429")),
  person("Mahendra", "Mariadassou", role = "aut", email = "mahendra.mariadassou@inrae.fr", 
      comment = c(ORCID = "0000-0003-2986-354X")),
  person("Stéphane", "Robin", role ="ctb", email = "stephane.robin@inrae.fr")
  )
Description: The Poisson-lognormal model and variants can be used for 
    a variety of multivariate problems when count data are at play, including 
    principal component analysis for count data (Chiquet, Mariadassou and Robin, 
    2018 <doi:10.1214/18-AOAS1177>), discriminant analysis and 
    network inference (Chiquet, Mariadassou and Robin, 2018 <http://proceedings.mlr.press/v97/chiquet19a.html>). 
    Implements variational algorithms to fit such models accompanied with a set of 
    functions for visualization and diagnostic. 
URL: https://jchiquet.github.io/PLNmodels/
BugReports: https://github.com/jchiquet/PLNmodels/issues
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.0.2
Depends: R (>= 3.4)
LazyData: true
biocViews:
Imports: methods, stats, MASS, parallel, R6, glassoFast, Matrix, Rcpp,
        nloptr (>= 1.2.0), igraph, grid, gridExtra, dplyr, tidyr,
        ggplot2, corrplot, magrittr
Suggests: knitr, rmarkdown, testthat, covr, pkgdown, biomformat,
        phyloseq
LinkingTo: Rcpp, RcppArmadillo, nloptr (>= 1.2.0)
VignetteBuilder: knitr
Collate: 'PLNfit-class.R' 'PLN.R' 'PLNLDA.R' 'PLNLDAfit-S3methods.R'
        'PLNLDAfit-class.R' 'PLNPCA.R' 'PLNPCAfamily-S3methods.R'
        'PLNfamily-class.R' 'PLNPCAfamily-class.R'
        'PLNPCAfit-S3methods.R' 'PLNPCAfit-class.R'
        'PLNfamily-S3methods.R' 'PLNfit-S3methods.R'
        'PLNmodels-package.R' 'PLNnetwork.R'
        'PLNnetworkfamily-S3methods.R' 'PLNnetworkfamily-class.R'
        'PLNnetworkfit-S3methods.R' 'PLNnetworkfit-class.R'
        'RcppExports.R' 'deprecated.R' 'import_utils.R' 'mollusk.R'
        'plot_utils.R' 'trichoptera.R' 'utils-pipe.R' 'utils.R'
NeedsCompilation: yes
Packaged: 2020-01-27 20:41:28 UTC; jchiquet
Author: Julien Chiquet [aut, cre] (<https://orcid.org/0000-0002-3629-3429>),
  Mahendra Mariadassou [aut] (<https://orcid.org/0000-0003-2986-354X>),
  Stéphane Robin [ctb]
Maintainer: Julien Chiquet <julien.chiquet@inrae.fr>
Repository: CRAN
Date/Publication: 2020-01-27 21:10:02 UTC
Built: R 4.0.0; x86_64-w64-mingw32; 2020-04-10 10:56:55 UTC; windows
Archs: i386, x64
