Type: Package
Package: NACHO
Title: NanoString Quality Control Dashboard
Version: 1.0.0
Authors@R: 
    c(person(given = "Mickaël",
             family = "Canouil",
             role = c("aut", "cre"),
             email = "mickael.canouil@cnrs.fr",
             comment = c(ORCID = "0000-0002-3396-4549")),
      person(given = "Roderick",
             family = "Slieker",
             role = "aut",
             email = "R.C.Slieker@lumc.nl",
             comment = c(ORCID = "0000-0003-0961-9152")),
      person(given = "Gerard",
             family = "Bouland",
             role = "aut",
             email = "G.A.Bouland@lumc.nl"))
Description: NanoString nCounter data are gene expression assays
    where there is no need for the use of enzymes or amplification
    protocols and work with fluorescent barcodes (Geiss et al. (2018)
    <doi:10.1038/nbt1385>).  Each barcode is assigned a
    messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
    target can be counted.  As a result each count of a specific barcode
    represents the presence of its target mRNA/miRNA.  'NACHO' (NAnoString
    quality Control dasHbOard) is able to analyse the exported NanoString
    nCounter data and facilitates the user in performing a quality
    control.  'NACHO' does this by visualising quality control metrics,
    expression of control genes, principal components and sample specific
    size factors in an interactive web application.
License: GPL-3 | file LICENSE
URL: https://github.com/mcanouil/NACHO,
        https://mcanouil.github.io/NACHO
BugReports: https://github.com/mcanouil/NACHO/issues
Depends: R (>= 3.5.0)
Imports: cli (>= 1.1.0), crayon (>= 1.3.4), dplyr (>= 0.8.3),
        ggbeeswarm (>= 0.6.0), ggforce (>= 0.3.1), ggplot2 (>= 3.2.1),
        ggrepel (>= 0.8.1), knitr (>= 1.25), magrittr (>= 1.5), purrr
        (>= 0.3.3), rlang (>= 0.1.2), rmarkdown (>= 1.16), rstudioapi
        (>= 0.10), scales (>= 1.0.0), sessioninfo (>= 1.1.1), shiny (>=
        1.4.0), shinyWidgets (>= 0.4.9), tibble (>= 2.1.3), tidyr (>=
        1.0.0), utils
Suggests: Biobase, covr (>= 3.3.2), GEOquery, limma, roxygen2 (>=
        7.0.2), testthat (>= 2.2.1)
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
SystemRequirements: pandoc (>= 1.12.3), pandoc-citeproc
NeedsCompilation: no
Packaged: 2020-01-09 16:38:58 UTC; mcanouil
Author: Mickaël Canouil [aut, cre] (<https://orcid.org/0000-0002-3396-4549>),
  Roderick Slieker [aut] (<https://orcid.org/0000-0003-0961-9152>),
  Gerard Bouland [aut]
Maintainer: Mickaël Canouil <mickael.canouil@cnrs.fr>
Repository: CRAN
Date/Publication: 2020-01-09 20:00:02 UTC
Built: R 4.0.0; ; 2020-04-10 11:14:45 UTC; windows
