Package: CNVScope
Type: Package
Title: A Versatile Toolkit for Copy Number Variation Relationship Data
        Analysis and Visualization
Version: 2.9.4
Date: 2019-12-7
Author: James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer
Maintainer: James Dalgleish <james.dalgleish@nih.gov>
BugReports: https://github.com/jamesdalg/CNVScope/issues/
Depends: R (>= 3.5.0),ggplot2
Imports:
        InteractionSet,BiocManager,tidyr,S4Vectors,circlize,igraph,visNetwork,reshape2,magrittr,htmltools,htmlwidgets,jointseg,plotly,shinyjs,logging,shiny,RCurl,foreach,GenomicFeatures,GenomicInteractions,HiCseg,IRanges,Matrix,OpenImageR,biomaRt,heatmaply,matrixStats,shinythemes,shinycssloaders,spatialfil,GenomicRanges,plyr,data.table,rslurm,dplyr,numbers,rtracklayer,BSgenome.Hsapiens.UCSC.hg19,doParallel,stringr,tibble,GenomeInfoDb
Suggests: knitr, rmarkdown,remotes,pwr,ComplexHeatmap
VignetteBuilder: knitr
URL: https://github.com/jamesdalg/CNVScope/
biocViews:
Description: Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
License: BSD_3_clause + file LICENSE
RoxygenNote: 6.1.1
LazyData: true
NeedsCompilation: no
Packaged: 2019-12-07 12:35:24 UTC; dalgleishjl
Repository: CRAN
Date/Publication: 2019-12-07 15:30:02 UTC
Built: R 4.0.0; ; 2020-02-27 15:57:41 UTC; windows
