BioInstaller            This package is a new platform to construct
                        interactive and reproducible biological data
                        analysis applications based on R language,
                        which includes the R functions and R Shiny
                        application, REST APIs.
change.info             Update biologly softwares infomation of system
conda                   Wrapper function of conda
conda.env.create        Wrapper function of 'conda env create', create
                        an environment based on an environment file
conda.env.list          Wrapper function of 'conda env list', list the
                        Conda environments
conda.list              Wrapper function of 'conda list', list linked
                        packages in a conda environment.
copy_configs            Function to copy the default configuration file
                        of BioInstaller
copy_plugins            Function to copy the default plugins of
                        BioInstaller
crawl.all.versions      A function can be used to craw all source code
                        from nongithub.cfg stored information
del.info                Delete biologly softwares infomation of system
docker.pull             Use docker to pull image
docker.search           Search softwares docker infomation in
                        BioInstaller docker database
get.info                Show biologly softwares infomation of system
get.meta                Get meta information of BioInstaller collected
                        sources, such as database, GitHub source,
                        non-GitHub source, web source
get.meta.files          Get all BioInstaller meta files path, such as
                        database, GitHub source, non-GitHub source, web
                        source
install.bioinfo         Download and install biology software or
                        database
install.github          Install or download softwares from Github
install.nongithub       Install or download softwares from non-Github
                        Web site
is.biosoftwares.db.active
                        Test active configuration file
new.bioinfo             Create new BioInstaller items to github forum
set.biosoftwares.db     Set BIO_SOFWARES_DB_ACTIVE as the BioInstaller
                        db
set_shiny_workers       Function to set shiny workers for background
                        service
show.installed          Show all installed bio-softwares in system
spack                   Wrapper function of spack
spack.list              Wrapper function of 'spack list', list and
                        search available packages
web                     Function to run BioInstaller shiny APP service
